View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209R-Insertion-10 (Length: 130)
Name: NF2209R-Insertion-10
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 7e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 6229192 - 6229310
Alignment:
| Q |
12 |
aggaggaatactgaagggattattggaaagatcatgaaggttgagtggctcaaaatacgaaagtgaaccatgaatagaagaattcagctttctccctaga |
111 |
Q |
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| T |
6229192 |
aggaggaataatgaagggattattggaaatatcataaaggttgagtggctcaaaatacgaaagtgaaccatgaatagaagaattcagctttctctcttga |
6229291 |
T |
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| Q |
112 |
aacataagcaaattaagct |
130 |
Q |
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|||| |||||||||||||| |
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| T |
6229292 |
aacagaagcaaattaagct |
6229310 |
T |
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Target: chr3 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 7423414 - 7423299
Alignment:
| Q |
15 |
aggaatactgaagggattattggaaagatcatgaaggttgagtggctcaaaatacgaaagtgaaccatgaatagaagaattcagctttctccctagaaac |
114 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||| |
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| T |
7423414 |
aggaataatgaagggattattggaaagatcaagaaggttgagtggctcaaaaaacgagagtgaaccatgaatagaagaattcagcttttacccttgaaac |
7423315 |
T |
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| Q |
115 |
ataagcaaattaagct |
130 |
Q |
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| T |
7423314 |
ttaagcaaattaagct |
7423299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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