View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209R-Insertion-2 (Length: 987)
Name: NF2209R-Insertion-2
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 822; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 5 - 899
Target Start/End: Complemental strand, 50244932 - 50244035
Alignment:
| Q |
5 |
atcaaaatgaacgagcaatgatattatgttgctaagtgttttgggagctacagaggaatgaaagaatgtatgactaagcaaactattgttataaaacaaa |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244932 |
atcaaaatgaacgagcaatgatattatgttgttaagtgttttgggagctacagaggaatgaaagaatgtatgactaagcaaactattgttataaaacaaa |
50244833 |
T |
|
| Q |
105 |
tcataaaattgataatggggaacatataaatttacaattaaccacatgttcatgcatggacaaatgctttcccccttacaa-cggttatcaagcatnnnn |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50244832 |
tcataaaattgataatggggaacatataaatttacaattaaccacatgttcatgcatggacaaatgctttcccccttacaaacggttatcaagcataaaa |
50244733 |
T |
|
| Q |
204 |
nnnnnnnnttactgagaagcttaaatgtaacacaaatcacaaaagagaagttattcttatagtacctgtatttctgaaagtatgcatccatgcattgcca |
303 |
Q |
| |
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| T |
50244732 |
aacaaaaattactgagaagcttaaatgtaacacaaatcacaaaagagaagttattcttatagtacctgtatttctgaaagtatgcatccatgcattgcca |
50244633 |
T |
|
| Q |
304 |
tgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggataattgaacatcttgtatggaccatgaggtggctcccacaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244632 |
tgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggataattgaacatcttgtatggaccatgaggtggctcccacaa |
50244533 |
T |
|
| Q |
404 |
tgcaaaatctaactgtgcaacggtccaaataagtaagaataaatattagacagtattagaaaacatttaagtaatcgcttcccaaattgtatttatatat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244532 |
tgcaaaatctaactgtgcaacggtccaaataagtaagaataaatattagacagtattagaaaacatttaagtaatcgcttcccaaattgtatttatatat |
50244433 |
T |
|
| Q |
504 |
caaggattaattacacatttaagtgagttattggaaaagagggaaaaggaaacacaaatgagaataccaaagtctcctcttggcttgatgattgcactgc |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244432 |
caaggattaattacacatttaagtgagttattggaaaagagggaaaaggaaacacaaatgagaataccaaagtctcctcttggcttgatgattgcactgc |
50244333 |
T |
|
| Q |
604 |
tgttctataaccgcgataaagagggtcatcagaggcttgatatacgagaattttggatggcaccctctcatattcaacacattgtaggtaaccatttaca |
703 |
Q |
| |
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| T |
50244332 |
tgttctataaccgcgataaagagggtcatcagaggcttgatatacgagaattttggatggcaccctctcatattcaacacattgtaggtaaccatttaca |
50244233 |
T |
|
| Q |
704 |
caaccttagaaaattaccacaaaataccaacctagcaagttagcaactatagaacaaactaaagaaaacttacacaaattaaacagcacaaacaaatttc |
803 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50244232 |
caaccttagaaaattatcacaaaataccaacctagcaagttagcaactatagaacaaactaaagaaaagttacacaaattaaacagcacaaacaaatttc |
50244133 |
T |
|
| Q |
804 |
tgaaaatgaaaacgggaaacatgtgaaataaacgagtaataaccttctacagatgcagcaactccgtggaaa-ttttgacgacc-atttgtggagatc |
899 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
50244132 |
tgaaaatgaaaacgggaaacatgtgaaataaacaagtaataaccttctacagatgcagcaactccgtggaaatttttgacgaccaatttgtggagatc |
50244035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 31808500 - 31808364
Alignment:
| Q |
264 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggat |
363 |
Q |
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|||||||||||||| |||||||| ||||||||||| ||||| ||||| | ||||||||||| | ||||||||| | ||| ||||| || |||| |||| |
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| T |
31808500 |
agtacctgtatttcagaaagtatacatccatgcatagccatcaccataaatgcacaatgcctgagtgctccacttactttaacataatttttccatggat |
31808401 |
T |
|
| Q |
364 |
aattgaacatcttgtatggaccatgaggtggctccca |
400 |
Q |
| |
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| | ||||| ||||| ||||||||||||||||||| |
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| T |
31808400 |
atctaaacattttgtaacgaccatgaggtggctccca |
31808364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 400
Target Start/End: Original strand, 43822361 - 43822497
Alignment:
| Q |
264 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggat |
363 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||| || | || ||||| | ||||||||| | |||| |||| |
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| T |
43822361 |
agtacctgaatttcagaaagtatgcatccatgcatggccatgaccatgaatgcacaatgtcttagagccccacttactttgacataattcttccatggat |
43822460 |
T |
|
| Q |
364 |
aattgaacatcttgtatggaccatgaggtggctccca |
400 |
Q |
| |
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| || | ||| |||||| |||||||||||| ||||| |
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|
| T |
43822461 |
agttaagcattttgtatttaccatgaggtggttccca |
43822497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 43815161 - 43815207
Alignment:
| Q |
264 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccat |
310 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
43815161 |
agtacctgtatttcagaaagtatgcatccatgcatggccatgaccat |
43815207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 43829943 - 43829988
Alignment:
| Q |
264 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgacca |
309 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
43829943 |
agtacctgaatttcagaaagtatgcatccatgcatggccataacca |
43829988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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