View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2209R-Insertion-3 (Length: 957)
Name: NF2209R-Insertion-3
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 509
Target Start/End: Complemental strand, 28291090 - 28290590
Alignment:
| Q |
9 |
ctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcggg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28291090 |
ctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcggg |
28290991 |
T |
|
| Q |
109 |
catgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattatttgtgcattttttggcacattgaagcctaatatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28290990 |
catgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattacttgtgcattttttggcacattgaagcctaatatg |
28290891 |
T |
|
| Q |
209 |
ttcacactttcatcacatttgtggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttcaaaa |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28290890 |
ttcacactttcatcacatttatggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttaaaaa |
28290791 |
T |
|
| Q |
309 |
tatctgattcttcaattatttcatctttaccaatagctttagataattctgttcttgcttttgtcatattgctagggttgcgtagtagctctaccatgat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28290790 |
tatctgattcttcaattatttcatctttaccaataactttagataattctgttcttgcttttgtcatattgctagggttgcgtagtagctctaccatgat |
28290691 |
T |
|
| Q |
409 |
ccattcaattgtgcttgaagttgtgtcaatcccagcagcaaataaatcctgacaaaacatcatttttggattcagtaaagtatactaattgcatttatta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
28290690 |
ccattcaattgtgcttgaagttgtgtcaatcccagcagcaaataaatcctaacaaaacatcatttctggattcagtaatgtatactaattgcatttatta |
28290591 |
T |
|
| Q |
509 |
t |
509 |
Q |
| |
|
| |
|
|
| T |
28290590 |
t |
28290590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 28319709 - 28320173
Alignment:
| Q |
9 |
ctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcggg |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| || |
|
|
| T |
28319709 |
ctaatggcaatcctggacaaattcttttgccagctccaaagggtataagctcaaaattattacctttatagttaatgtcacactccaaaaatctttcagg |
28319808 |
T |
|
| Q |
109 |
catgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattatttgtgcattttttggcacattgaagcctaatatg |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
28319809 |
tgcaaacatatctggatttttccaaatggttggatctctccccatagcccacacattgactagtacttgtgcattttttggcacattaaagcctaatatg |
28319908 |
T |
|
| Q |
209 |
ttcacactttcatcacatttgtggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttcaaaa |
308 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
28319909 |
ttcacaagctcatcacatttgtgaggtaacaataatggaattggtgggtgcaacctaaaggtttctttcacaactgcttgtaagaaaggtaacttgaaaa |
28320008 |
T |
|
| Q |
309 |
tatctgattcttcaattatttcatctttaccaatagctttagataattctgttcttgcttttgtcatattgctagggttgcgtagtagctctaccatgat |
408 |
Q |
| |
|
| | |||||||||||| ||||| |||| ||||| | || | |||| ||| ||||| ||||||| | ||| ||| || |||||||||||| | || || |
|
|
| T |
28320009 |
tgtgtgattcttcaatggtttcacctttgccaattgtttgacataactcttttcttacttttgttaatttgtcaggattacgtagtagctctgcaataat |
28320108 |
T |
|
| Q |
409 |
ccattcaattgtgcttgaagttgtgtcaatcccagcagcaaataaatcctgacaaaacatcattt |
473 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||||| |||| ||||||||| |||| |
|
|
| T |
28320109 |
ccattcaattatgcttgatgttgtgtcaatcccagcaacaaataagtcctaacaaaacatgattt |
28320173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 465
Target Start/End: Original strand, 28328555 - 28329011
Alignment:
| Q |
9 |
ctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcggg |
108 |
Q |
| |
|
|||||| |||||| |||||||||||||| || || ||||| ||||| |||||||||| || |||||||||||||||||||| |||||||||||||| || |
|
|
| T |
28328555 |
ctaatggcaatcccggacaaattcttttacctgccccaaaaggtatgagctcaaaattattacccttataattaatgtcacattccaaaaatctttcagg |
28328654 |
T |
|
| Q |
109 |
catgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattatttgtgcattttttggcacattgaagcctaatatg |
208 |
Q |
| |
|
| |||||||||||| ||||| ||| |||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28328655 |
cttgaacatatttgaattttcccatatggttggatctcttcccatggcccataaattgactagtatttgtgcattttttggcacattgaagcctgatatg |
28328754 |
T |
|
| Q |
209 |
ttcacactttcatcacatttgtggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttcaaaa |
308 |
Q |
| |
|
|||||| |||||||||||||| |||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
28328755 |
ttcacattttcatcacatttgcggggtatcgataatggagctggtgggtgcaatcgaagggtttccttcacaactgcttgtaagtaaggtaacttggaaa |
28328854 |
T |
|
| Q |
309 |
tatctgattcttcaattatttcatctttaccaatagctttagataattctgttcttgcttttgtcatattgctagggttgcgtagtagctctaccatgat |
408 |
Q |
| |
|
||| ||||||||| ||| ||||||||| || || ||| | |||||||| |||||||||| | |||| |||||| |||| ||||||| |||| | |
|
|
| T |
28328855 |
tatttgattcttctattgcttcatcttttcccattacttgacataattcttttcttgctttatctagtttgccagggttacgtaatagctctgccatagt |
28328954 |
T |
|
| Q |
409 |
ccattcaattgtgcttgaagttgtgtcaatcccagcagcaaataaatcctgacaaaa |
465 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
28328955 |
ccattcaatcgtgtttgatgttgtgtcaatcccagcaaaaaataaatcctgccaaaa |
28329011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 458
Target Start/End: Original strand, 28295876 - 28296325
Alignment:
| Q |
9 |
ctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcggg |
108 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||| | | ||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
28295876 |
ctaatggcaaccctggacaaattcttttgcctgctccaaacggtataagctcaaaattgctacccatatacttaatgtcacactccaaaaatctttcagg |
28295975 |
T |
|
| Q |
109 |
catgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattatttgtgcattttttggcacattgaagcctaatatg |
208 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
28295976 |
cataaacatatctggatttttccaaatggttggatctcttcccatggcccacacattgactaatatttgtgcatgtttttgcacaatgaagcctaatatg |
28296075 |
T |
|
| Q |
209 |
ttcacactttcatcacatttgtggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttcaaaa |
308 |
Q |
| |
|
||||| |||| |||||||| ||||| | |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
28296076 |
ctcacagtttcctcacatttatggggcagcaataatggagctggtgggtgcaaccgaagggtttccttcacaactgcttgtaagtaaggtaacttggaaa |
28296175 |
T |
|
| Q |
309 |
tatctgattcttcaattatttcatctttaccaatagctttagataattctgttcttgcttttgtcatattgctagggttgcgtagtagctctaccatgat |
408 |
Q |
| |
|
||| ||||||||||| |||||||||| ||||| |||| | |||| || ||||| ||||||| | ||| |||||| |||| |||||| |||| || |
|
|
| T |
28296176 |
tatttgattcttcaacagtttcatcttttccaattgcttgacataactcctttcttacttttgttaatttgtcagggttacgtaatagctccgccataat |
28296275 |
T |
|
| Q |
409 |
ccattcaattgtgcttgaagttgtgtcaatcccagcagcaaataaatcct |
458 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||| |||| ||||||| |
|
|
| T |
28296276 |
ccattcaatcgtgcttgatgttgtgtcaataccagcaacaaacaaatcct |
28296325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 28306874 - 28307236
Alignment:
| Q |
9 |
ctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcggg |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28306874 |
ctaatggcaatcctgggcaaattcttttgccagccccaaatggtataagctcaaaattgttacccttataattaatgtcacgctccaaaaatctttcagg |
28306973 |
T |
|
| Q |
109 |
catgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattatttgtgcattttttggcacattgaagcctaatatg |
208 |
Q |
| |
|
| ||| |||||||||||| |||||| ||||||||||||||||| ||||| ||||| |||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
28306974 |
ctcaaacttatttggattttcccaaatagttggatctcttcccatggcccacacattgactaatacttgtgcattttttggcacattgaagcctgatatg |
28307073 |
T |
|
| Q |
209 |
ttcacactttcatcacatttgtggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttcaaaa |
308 |
Q |
| |
|
|||| | ||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||| ||||||||||| || || ||| | ||| |
|
|
| T |
28307074 |
ttcaaattttcatcacatttgtggggtagcaataatggagctgcggggtgcaacctaaaggtttccttcaccactgcttgtaaaaatggtaacatggaaa |
28307173 |
T |
|
| Q |
309 |
tatctgattcttcaattatttcatctttaccaatagctttagataattctgttcttgcttttg |
371 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
28307174 |
tatgtgattcttcaattgtttcatctttaccaatttctttacataactcttttcttgcttttg |
28307236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 28302748 - 28302943
Alignment:
| Q |
11 |
aatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaatggttgcccttataattaatgtcacactccaaaaatctttcgggca |
110 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| || |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
28302748 |
aatggcaatcatggaaaaattcttttgcctgccccaaagggtataagttcaaaattattacccttataattaatgtcacactccaaaaatctttgaggta |
28302847 |
T |
|
| Q |
111 |
tgaacatatttggatttttccaaatggttggatctcttcccatagcccatacattaactattatttgtgcattttttggcacattgaagcctaata |
206 |
Q |
| |
|
|||| | |||||||||| ||||| |||||| ||||||||||| ||| | ||||| |||| ||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
28302848 |
tgaatacatttggatttgcccaaacggttgggtctcttcccatggcctacacattgactaatatttgtgcatttttcgacacattgaaacctaata |
28302943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 205 - 467
Target Start/End: Original strand, 28303248 - 28303510
Alignment:
| Q |
205 |
tatgttcacactttcatcacatttgtggggtaccaataatggagctggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttc |
304 |
Q |
| |
|
|||||||||| ||||||||| ||| | ||||||||| |||||||||||||| ||||| |||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
28303248 |
tatgttcacaatttcatcac-tttattgggtaccaaaaatggagctggtgggtgcaaccgaagagtttccttcacaaccgcttgtaaaaaaggcaactta |
28303346 |
T |
|
| Q |
305 |
aaaatatctgattcttcaattatttcatctttaccaatagctttagataattctgttcttgcttttgtcatat-tgctagggttgcgtagtagctctacc |
403 |
Q |
| |
|
|| ||| ||||||||||||| |||||||||||||||| |||| | |||| ||| |||||| |||| | || || | ||||| | |||||||||| || |
|
|
| T |
28303347 |
aatgtatgtgattcttcaattgtttcatctttaccaattgcttcacataactcttttcttggttttttttaatgtgtttgggttacatagtagctctgcc |
28303446 |
T |
|
| Q |
404 |
atgatccattcaattgtgcttgaagttgtgtcaatcccagcagcaaataaatcctgacaaaaca |
467 |
Q |
| |
|
|| | ||| ||||| || ||||| | |||||||||||| ||| |||||||||| | |||||||| |
|
|
| T |
28303447 |
ataacccactcaatcgtccttgatgatgtgtcaatcccggcaacaaataaatcataacaaaaca |
28303510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 28317295 - 28317208
Alignment:
| Q |
71 |
cccttataattaatgtcacactccaaaaatctttcgggcatgaacatatttgga-tttttccaaatggttggatctcttcccatagcc |
157 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||| |||| |||||| || ||||| |||||| | |||||||||||||||||| |
|
|
| T |
28317295 |
ccctaataattaatgtcatcctccaaaaatctttcaggcgtgaatatatttagatttttttcaaatgatgggatctcttcccatagcc |
28317208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 28317150 - 28317067
Alignment:
| Q |
250 |
tggtggatgcaatcgaaaggtttccttcacaactgcttgtaagaaaggcaacttcaaaatatctgattcttcaattatttcatc |
333 |
Q |
| |
|
|||||||||||||| || |||| |||||||| ||||||||||||||| ||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
28317150 |
tggtggatgcaatccaatagttttcttcacaattgcttgtaagaaaggtaacttgtaaatatgagattcctcaatggtttcatc |
28317067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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