View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209R-Insertion-4 (Length: 845)
Name: NF2209R-Insertion-4
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 1033819 - 1034206
Alignment:
| Q |
9 |
aaattgagcctataagagttctgagcagaagacattaatcatcagcgagcgactctcaaaagcaagaactaattttagatacagactgaatttcacatca |
108 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1033819 |
aaattgaacctataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaacaactaattttagatacagactgaatttcacatca |
1033918 |
T |
|
| Q |
109 |
atgttgaccttgctgagcttggggtgtctattattgatcatataccagaagaaattttgtgcctgtctgttcagaatcttgttctggcat-----atttg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
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| T |
1033919 |
atgttgaccttgctgagcttggggtgtctattattgatcatataccagaagaaattttgtgcctgtctgttcagaatcttg-tatggcatatttaatttg |
1034017 |
T |
|
| Q |
204 |
actggtttaggact----cggaatcaccaagtaagatttgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatat |
299 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034018 |
actggtttgggactcggccggaatcattaagtaagatttgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatat |
1034117 |
T |
|
| Q |
300 |
gttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaa |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034118 |
gttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaa |
1034206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 434
Target Start/End: Complemental strand, 50832255 - 50831828
Alignment:
| Q |
9 |
aaattgagcctataagagttctgagcagaagacattaatcatcagcgagcgactctcaaaagcaagaactaattttagatacagact--gaatttcacat |
106 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||| || ||||| | ||||||||||||||| ||||||| | ||||||||||| || |||||||| |
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| T |
50832255 |
aaattgaacctattagagttctgagcagaagacattcattatcagtaaatgactctcaaaagcaacaactaatgtcagatacagactttgagtttcacat |
50832156 |
T |
|
| Q |
107 |
caatgttgaccttgctgagcttggggtgtctattattgatcatataccagaagaaattttgtgcctgtctgttcagaatcttgttctggcatatttgact |
206 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
50832155 |
caatgttgatcttgctgagcttggggtgtctattattgaccatacaccggaagaaattttgtacctgtctattcagaatcttgttctggcatattcgact |
50832056 |
T |
|
| Q |
207 |
ggtttaggactcggaatcaccaagtaagatttgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatatgttttca |
306 |
Q |
| |
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||||| || |||||||| | || ||||||||||||| |||||| |||||||||||||||||||| ||||||| || ||||| |||||||| |||||| |
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| T |
50832055 |
ggtttgggctccggaatcagtaggtgagatttgcatttagtcaacatatgcatctttgaattcgtttgcaacatgaaaaatggacatttatatattttca |
50831956 |
T |
|
| Q |
307 |
gttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaaaatgaccatataagacat |
406 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| || ||| ||||||| |
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| T |
50831955 |
gttacattttctcaagtttcctggtgaaaatacagttcatacctaatatcttgttgactggtacaactcagccaagatttaaaataactatacaagacat |
50831856 |
T |
|
| Q |
407 |
ttttgtctggttatcccgttatttacaa |
434 |
Q |
| |
|
|||||||||||| |||| |||| ||||| |
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| T |
50831855 |
ttttgtctggttgtcccattatgtacaa |
50831828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 170 - 401
Target Start/End: Original strand, 4515652 - 4515883
Alignment:
| Q |
170 |
cctgtctgttcagaatcttgttctggcatatttgactggtttaggactcggaatcaccaagtaagatttgcatttactcaa-cagatgcatctttgaatt |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
4515652 |
cctgtctgttcagaatcttgttctggcatatttgactggtttgggattcggaatcactaggtaagatttgcatttactcaaacagatgcatctt-gaatt |
4515750 |
T |
|
| Q |
269 |
cgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| || |
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|
| T |
4515751 |
cgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttcccggtgaaaataaagttcaaacctaatgtcttgttgactggg |
4515850 |
T |
|
| Q |
369 |
acaactcagccaatatttaaaatgaccatataa |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
4515851 |
acaactcagccaatatttaaaatgaccatataa |
4515883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 619 - 734
Target Start/End: Complemental strand, 50831125 - 50831010
Alignment:
| Q |
619 |
tgggcttttagaaactgcatgacattaccttgaattacagtgttcttaatatttcagtagtaccgttctaagtgtcgaaggctatgtagccaagtcaaag |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| |||| ||||||||| |||||||| |||||||||||| |
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| T |
50831125 |
tgggcttttagaaactgcatgacattaccttcaattacagtgtccttaatatttcggaagtacggttcaaagtgtcgatggctatgtcgccaagtcaaag |
50831026 |
T |
|
| Q |
719 |
acggaggggagtgctt |
734 |
Q |
| |
|
|| |||||||||||| |
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| T |
50831025 |
accaaggggagtgctt |
50831010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 4516329 - 4516411
Alignment:
| Q |
20 |
ataagagttctgagcagaagacattaatcatcagcgagcgactctcaaaagcaagaactaattttagatacagactgaatttc |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
4516329 |
ataagagttctgagcagaagacattcatcatcagcgaatgactctcaaaagcaacaactaattttagatacagactgagtttc |
4516411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 50831228 - 50831176
Alignment:
| Q |
523 |
gaagctcagtgggctttatgaatatcaaactactgccgcatcagttgatccaa |
575 |
Q |
| |
|
||||||| || |||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
50831228 |
gaagctcggtaggctttctgaatctcaaactactgccgcatcagttgatccaa |
50831176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 525
Target Start/End: Complemental strand, 50831554 - 50831502
Alignment:
| Q |
473 |
taccattgactctaacgccagttctactcaggtctcagagagttgtgtcagaa |
525 |
Q |
| |
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||||||| |||| ||| ||||||||| ||||| |||||||||||||||||||| |
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|
| T |
50831554 |
taccattaactccaacaccagttctattcaggcctcagagagttgtgtcagaa |
50831502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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