View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2209R-Insertion-5 (Length: 695)
Name: NF2209R-Insertion-5
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Complemental strand, 48486805 - 48486250
Alignment:
| Q |
9 |
gggcagacccgattgtacaagaccaaaggaagtgactttcacgaggcaatggaggaggcaatgttggcagataatggcattctggatccacattatagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486805 |
gggcagacccgattgtacaagaccaaaggaagtgactttcacgaggcaatggaggaggcaatgttggcagataatggcattctggatccacattatagag |
48486706 |
T |
|
| Q |
109 |
ctaagcaaattgtggagggtgcgacttcctgtgctgaacaggaatatcactgccaaggccaggtgattttaatttttccacttcgtgttgtgtatgatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486705 |
ctaagcaaattgtggagggtgcgacttcctgtgctgaacaggaatatcactgccaaggccaggtgattttaatttttccacttcgtgttgtgtatgatca |
48486606 |
T |
|
| Q |
209 |
tgattcatgactgatgatgctgtgaatctataagttaagtttagcataaaatatagagatctaattgtgtgtgaacttgtaatttagatgacataggcta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486605 |
tgattcatgactgatgatgctgtgaatctataagttaagtttagcataaaatatagagatctaattgtgtgtgaacttgtaatttagatgacataggcta |
48486506 |
T |
|
| Q |
309 |
catgcattagtcggcattcttcttagtaggaagggttaagggctatatatgctctagcatctgatttggttatagcatacttcttggtctttgatgtcat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486505 |
catgcattagtcggcattcttcttagtaggaagggttaagggctatatatgctctagcatctgatttggttatagcatacttcttggtctttgatgtcat |
48486406 |
T |
|
| Q |
409 |
aaatcatgtttgaacatgactcatgaattgaaatatataac--aaattaatcacctatgaccactgaatgaaacacaagagtttaaatgatgcatgccat |
506 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48486405 |
aaatcatgtttgagcatgactcatgaattgaaatatataacaaaaattaatcacctatgaccactgaatgaaacataagagtttaaatgatgcatgccat |
48486306 |
T |
|
| Q |
507 |
atcatgaggattttttnnnnnnntcatgtctcaaaatgtataatcaaacagtatga |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48486305 |
atcatgaggatttttaaaaaaaatcatgtctcaaaatgtataatcaaacagtatga |
48486250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 621 - 695
Target Start/End: Complemental strand, 48486213 - 48486139
Alignment:
| Q |
621 |
aagatgtatctttatgagagatgacactaatttctaatgaatttttcttttaaatcttatagagtcttgttaatt |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
48486213 |
aagatgtatctttatgagagatgacactaatttctaatgaatttttctcttaaatcttatagagtctagttaatt |
48486139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University