View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209R-Insertion-6 (Length: 656)
Name: NF2209R-Insertion-6
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 9 - 656
Target Start/End: Original strand, 4178545 - 4179192
Alignment:
| Q |
9 |
gcacttagattgaatataaaaccataaacataaaaacgccaataattcattaatcaaatacattactgaaattggatacagccataaacataaaaaagat |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178545 |
gcacttagatttaatataaaaccataaacataaaaacgccaataattcattaatcaaatacattactgaaattggatacagccataaacataaaaaagat |
4178644 |
T |
|
| Q |
109 |
ctcaattattaacttgttgaaagggggaacccaattccatgtctctcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178645 |
ctcaattattaacttgttgaaagggggaacccaattccatgtctctcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggca |
4178744 |
T |
|
| Q |
209 |
acgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattga |
308 |
Q |
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| T |
4178745 |
acgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattga |
4178844 |
T |
|
| Q |
309 |
catcattgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaag |
408 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178845 |
catcatcgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaag |
4178944 |
T |
|
| Q |
409 |
gtggcaaacccataacaaatattccccttgctgtctcttatgctatctgtaaagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaag |
508 |
Q |
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| T |
4178945 |
gtggcaaacccataacaaatattccccttgctgtctcttatgctatctgtaaagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaag |
4179044 |
T |
|
| Q |
509 |
tcatggacttgctgacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaa |
608 |
Q |
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| T |
4179045 |
tcatggacttgcagacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaa |
4179144 |
T |
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| Q |
609 |
atgcgccgtgctttgaaatgtcgaacttatagctttctgtatcaggct |
656 |
Q |
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| T |
4179145 |
atgcgccgtgctttgaaatgtcgaacttatagctttctgtaccaggct |
4179192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 95 - 652
Target Start/End: Original strand, 4167704 - 4168261
Alignment:
| Q |
95 |
aacataaaaaagatctcaattattaacttgttgaaagggggaacccaattccatgtctctcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgcc |
194 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
4167704 |
aacataaaagatttctcaattattaacttgttgaaagggggaagccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgcaaaaatcgcc |
4167803 |
T |
|
| Q |
195 |
aattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattctgatcaaacaatgcaattgctgca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4167804 |
aattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattccgatcaaacaatgcaattgctgca |
4167903 |
T |
|
| Q |
295 |
aacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataaccc |
394 |
Q |
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||||||||||||||||| | ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167904 |
aacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagcaacttgaggtggaagtttggttgatccatcaataaccc |
4168003 |
T |
|
| Q |
395 |
acaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgtaaagtttagcaggaagcatgatgcaccacatagagt |
494 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||| |||||||||||||| | |||||| |||||| ||||||| ||||||||||||||||| ||||| |
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| T |
4168004 |
acaagcccttaaaggtggcaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcaccacagagagt |
4168103 |
T |
|
| Q |
495 |
cacaagtacagaagtcatggacttgctgacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggt |
594 |
Q |
| |
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||||||| ||| |||||| |||||||||||||||||||| |||||| ||||||||| |||||||| |||||||| || || || ||||||||||||||| |
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| T |
4168104 |
cacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatttgtaaagattggtgataaaagttgtaatgcaaggacagtgcctgtaggt |
4168203 |
T |
|
| Q |
595 |
agaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtatca |
652 |
Q |
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| T |
4168204 |
agaaggtttgctaaatgtgccgtgctctgaaatgtcaaacttatagctgtttgtatca |
4168261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 117 - 491
Target Start/End: Complemental strand, 34944744 - 34944370
Alignment:
| Q |
117 |
ttaacttgttgaaagggggaacccaattccatgtctctcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtg |
216 |
Q |
| |
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|||| |||||||||| ||||| |||||||||||||| | ||||||||||||||| || |||||||| || ||||| |||||| | |||||||| || || |
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| T |
34944744 |
ttaatttgttgaaagtgggaagccaattccatgtctatgagtaggaaatgcaacaaacagcatgctacagaaaacaccaattccaacaggcaatgcagta |
34944645 |
T |
|
| Q |
217 |
aggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattg |
316 |
Q |
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||||||| | ||||| | ||| ||| |||||| || || || |||||||| |||||||||| |||||| |||| ||| |||| ||||||||| |||| |
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| T |
34944644 |
aggatttgacgcatctcatatgaaggtgatggaaagaaacagttaaccacattatgatcaaacattgcaatagctgaaaaaaccaaaattgacataattg |
34944545 |
T |
|
| Q |
317 |
catgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaa |
416 |
Q |
| |
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||||||||||||| || ||| ||| ||||||||||| ||| || | |||||||| | | |||||||||||| | ||| ||||| || || |||||||| |
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| T |
34944544 |
catgcatgaaatcaatgaaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtggcaaa |
34944445 |
T |
|
| Q |
417 |
cccataacaaatattccccttgctgtctcttatgctatctgtaaagtttagcaggaagcatgatgcaccacatag |
491 |
Q |
| |
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|||||||| || ||||| || ||||| | | |||||| || ||| ||| ||||||||||| ||||||||||| |
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| T |
34944444 |
tccataacatatgttccctttattgtctttgaagctatcagtgaagcatagtaggaagcatgaggcaccacatag |
34944370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 34947880 - 34947771
Alignment:
| Q |
313 |
attgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtgg |
412 |
Q |
| |
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||||||||||||||||| || ||| ||| ||||||||||| ||| || | |||||||| | | |||||||||||| | ||| ||||| || || |||| |
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| T |
34947880 |
attgcatgcatgaaatcaatcaaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtgg |
34947781 |
T |
|
| Q |
413 |
caaacccata |
422 |
Q |
| |
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|||| ||||| |
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|
| T |
34947780 |
caaatccata |
34947771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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