View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209R-Insertion-7 (Length: 581)
Name: NF2209R-Insertion-7
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 178 - 581
Target Start/End: Original strand, 42313543 - 42313933
Alignment:
| Q |
178 |
ctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgcatccagaa |
277 |
Q |
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| T |
42313543 |
ctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgcatccagaa |
42313642 |
T |
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| Q |
278 |
ttnnnnnnnnnnnnnnnnttgattagctttaagcaacaaaa-aagcttattttggtaatgtaagtgatcgtttgtacataattttgatcaagtcagattg |
376 |
Q |
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| T |
42313643 |
ttaaaataaaaaaaaaaattgattagctttaagcaacaaaaaaagcttattttggcaatgtaagtgatcgtttgtacataattttgatcaagtcaaattg |
42313742 |
T |
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| Q |
377 |
ttttcatataatataatctattctaagaaagtggtaagttgtttcataagcaacaaaccctaacttatcactgataacttaccactgataatcagcatat |
476 |
Q |
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| T |
42313743 |
ttttcatataatataatctattctaagaaagtggtaagttgtttcataagcaacaaaccc--------------taacttaccactgataatcagcatgt |
42313828 |
T |
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| Q |
477 |
tttacaccatttttatttgcaacacatgcttcaactaagggaacaacatcaggttcactaggcacagttgctttcagagattctcgaaacagctccgcca |
576 |
Q |
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| T |
42313829 |
tttacaccatttttatttgcaacacatgcttcaactaagggaacaacatcaggttcactaggcacagttgctttcagagattctcgaaacagctccgcca |
42313928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 42313373 - 42313477
Alignment:
| Q |
9 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagatttttcgcaatgcccta |
108 |
Q |
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| T |
42313373 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagatttttcgcaatgcccta |
42313472 |
T |
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| Q |
109 |
cacac |
113 |
Q |
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||||| |
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| T |
42313473 |
cacac |
42313477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 47977968 - 47978070
Alignment:
| Q |
10 |
tatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagatttttcgcaatgccctac |
109 |
Q |
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| T |
47977968 |
tatccacttctttgataagacaatattgacaaatccaggacccgcaacagagcacgattctaccatctctgatggagggagatttttcataatggcctac |
47978067 |
T |
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| Q |
110 |
aca |
112 |
Q |
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||| |
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| T |
47978068 |
aca |
47978070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 47978151 - 47978253
Alignment:
| Q |
177 |
tctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgcatccaga |
276 |
Q |
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|||| |||||||||||||| | |||||| ||| || |||||| ||| ||||| ||||||| ||| |||||||||||| || |||||||||| || ||| |
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| T |
47978151 |
tctctgattatacctctccgactgaacgaggacttttgaattccggtcgcttccctttaatcttagcaaaaagactcattgcattattactgcgtcaaga |
47978250 |
T |
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| Q |
277 |
att |
279 |
Q |
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||| |
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| T |
47978251 |
att |
47978253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 533
Target Start/End: Original strand, 47978732 - 47978807
Alignment:
| Q |
455 |
ttaccactgataatcagcatattttacaccatttttatttgcaacacatgcttcaactaagggaacaacatcaggttca |
533 |
Q |
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| T |
47978732 |
ttaccattgataatcagcatgtttaacaccgttttt---tggaacacaagcatcaattaagggaacaacatcaggttca |
47978807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 39711881 - 39711805
Alignment:
| Q |
9 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatgga |
85 |
Q |
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| T |
39711881 |
ctatccacttatttgataagacaatattcacaaatccaagaccggcaacagagcacgactctaccatatctgatgga |
39711805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 39711708 - 39711615
Alignment:
| Q |
177 |
tctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgca |
270 |
Q |
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|||| |||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||| ||| |||||||||||| || || |||||||| |
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| T |
39711708 |
tctctgattatacctctccaagtgagcgtggatttttgaattccggttgttgctctttaatcttagcaaaaagactcattgcattgttactgca |
39711615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 51564912 - 51564827
Alignment:
| Q |
9 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagattt |
94 |
Q |
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| T |
51564912 |
ctatccagttctttgataagacaatattgacaaatccaggacccgcaacagagcaagattggaccatttgtgatggagggagattt |
51564827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 51564814 - 51564735
Alignment:
| Q |
191 |
tctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgca |
270 |
Q |
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||||||||||||||||||||| ||| || |||||||| ||||||| ||| |||||||||||| || ||||||||||| |
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| T |
51564814 |
tctccaagtgaacgtggatttatgaactcctgttgcttccctttaatcttagcaaaaagactcattgcattattactgca |
51564735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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