View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209R-Insertion-9 (Length: 230)
Name: NF2209R-Insertion-9
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209R-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 27079643 - 27079864
Alignment:
| Q |
9 |
ataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaacccannnnnnngccaaactaacactttcactaacagaatttgttgaag |
108 |
Q |
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| T |
27079643 |
ataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttgccaaactaacactttcactaacagaatttgttgaag |
27079742 |
T |
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| Q |
109 |
aagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaatccttaaacgtgttattaacaccataacctttgaatgttaccttatgatc |
208 |
Q |
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| T |
27079743 |
aagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgttattaacaccataacctttgaatgttatcttatgatc |
27079842 |
T |
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| Q |
209 |
cgcatcagcacctttagcatac |
230 |
Q |
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| T |
27079843 |
cgcatcagcacctttagcatac |
27079864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 27065941 - 27066090
Alignment:
| Q |
24 |
ttcaacatcttttcccggaaaaacttaccaggttgaacccannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttag |
123 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| | ||| || ||||||| || || | ||| |
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| T |
27065941 |
ttcaacatcttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcactgagagagttagttgaagtagtag---ttttat |
27066037 |
T |
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| Q |
124 |
tataaccggcaaaagaaataccttttttatcgtaatccttaaacgtgttatta |
176 |
Q |
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| T |
27066038 |
tataactagcaaaagaaatacctttcttgtcataatccttaaatgtattatta |
27066090 |
T |
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