View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2209_high_12 (Length: 392)

Name: NF2209_high_12
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2209_high_12
NF2209_high_12
[»] chr4 (30 HSPs)
chr4 (30-251)||(53958684-53958913)
chr4 (254-377)||(1535824-1535947)
chr4 (257-377)||(49284410-49284530)
chr4 (254-377)||(36012138-36012260)
chr4 (254-377)||(17888502-17888625)
chr4 (254-377)||(31377443-31377565)
chr4 (254-377)||(35018989-35019111)
chr4 (257-361)||(36851342-36851446)
chr4 (254-377)||(11054509-11054631)
chr4 (254-377)||(16338165-16338288)
chr4 (289-377)||(34241046-34241134)
chr4 (289-377)||(25954803-25954891)
chr4 (254-373)||(20818624-20818743)
chr4 (254-377)||(37801216-37801339)
chr4 (259-377)||(46583508-46583616)
chr4 (258-377)||(52632571-52632680)
chr4 (279-377)||(47084065-47084163)
chr4 (271-377)||(12792200-12792306)
chr4 (288-377)||(46474047-46474136)
chr4 (307-377)||(9742538-9742608)
chr4 (296-373)||(10094387-10094464)
chr4 (288-377)||(50328849-50328938)
chr4 (267-377)||(322509-322624)
chr4 (255-377)||(19124691-19124813)
chr4 (303-373)||(54090237-54090307)
chr4 (253-377)||(5780716-5780829)
chr4 (304-377)||(33982057-33982130)
chr4 (255-351)||(45784003-45784099)
chr4 (253-283)||(25954885-25954915)
chr4 (254-283)||(34241128-34241157)
[»] chr2 (19 HSPs)
chr2 (254-377)||(42769710-42769833)
chr2 (254-377)||(14941996-14942119)
chr2 (254-377)||(29846495-29846618)
chr2 (254-377)||(14186390-14186513)
chr2 (254-377)||(19181601-19181724)
chr2 (254-377)||(40277240-40277363)
chr2 (254-341)||(3597842-3597929)
chr2 (254-377)||(3956625-3956748)
chr2 (281-377)||(6318436-6318533)
chr2 (295-377)||(43139800-43139882)
chr2 (302-377)||(14539704-14539779)
chr2 (304-377)||(33009726-33009799)
chr2 (254-330)||(1386114-1386190)
chr2 (326-377)||(1387312-1387363)
chr2 (302-379)||(28321703-28321780)
chr2 (312-377)||(41674716-41674781)
chr2 (307-365)||(2888106-2888164)
chr2 (307-373)||(40780112-40780179)
chr2 (254-286)||(28321667-28321699)
[»] chr5 (26 HSPs)
chr5 (255-377)||(38397651-38397773)
chr5 (254-377)||(6257362-6257485)
chr5 (254-377)||(37168985-37169108)
chr5 (254-377)||(23218538-23218661)
chr5 (254-377)||(39862439-39862562)
chr5 (254-373)||(16618522-16618641)
chr5 (254-377)||(15631666-15631790)
chr5 (254-377)||(8456915-8457038)
chr5 (254-377)||(10081198-10081323)
chr5 (258-377)||(25560284-25560402)
chr5 (257-372)||(29491369-29491483)
chr5 (263-377)||(36769035-36769149)
chr5 (254-377)||(42119675-42119798)
chr5 (304-374)||(27916196-27916266)
chr5 (288-377)||(11856348-11856437)
chr5 (288-377)||(33271256-33271345)
chr5 (289-377)||(10115213-10115301)
chr5 (302-377)||(29790219-29790294)
chr5 (307-377)||(614397-614467)
chr5 (302-377)||(9737981-9738058)
chr5 (291-377)||(10052489-10052575)
chr5 (302-377)||(6174797-6174874)
chr5 (293-377)||(3341111-3341195)
chr5 (309-362)||(33188330-33188383)
chr5 (281-336)||(2676500-2676555)
chr5 (338-377)||(19322058-19322097)
[»] chr7 (20 HSPs)
chr7 (254-377)||(34707169-34707292)
chr7 (254-377)||(10576726-10576849)
chr7 (254-377)||(34259571-34259694)
chr7 (254-377)||(44164695-44164818)
chr7 (254-377)||(29238095-29238218)
chr7 (254-377)||(29981065-29981188)
chr7 (254-377)||(29555891-29556014)
chr7 (289-377)||(24320426-24320514)
chr7 (254-377)||(19334512-19334635)
chr7 (295-377)||(32876523-32876605)
chr7 (289-377)||(17303101-17303189)
chr7 (289-377)||(33057644-33057732)
chr7 (286-377)||(10334231-10334322)
chr7 (260-377)||(9770712-9770830)
chr7 (307-377)||(15017826-15017896)
chr7 (258-350)||(2702188-2702280)
chr7 (281-336)||(41853205-41853260)
chr7 (307-355)||(43342485-43342533)
chr7 (307-377)||(26284383-26284453)
chr7 (302-362)||(23032104-23032164)
[»] chr8 (17 HSPs)
chr8 (254-377)||(22324649-22324772)
chr8 (254-377)||(35806847-35806970)
chr8 (254-377)||(42072481-42072604)
chr8 (253-377)||(21525411-21525535)
chr8 (254-373)||(33934321-33934440)
chr8 (254-377)||(42013925-42014048)
chr8 (254-377)||(26021449-26021573)
chr8 (266-377)||(16523159-16523270)
chr8 (268-375)||(16818939-16819046)
chr8 (254-377)||(10112100-10112223)
chr8 (288-376)||(16591361-16591449)
chr8 (265-377)||(21488119-21488231)
chr8 (293-377)||(24065326-24065410)
chr8 (296-377)||(19334836-19334917)
chr8 (287-370)||(2824167-2824250)
chr8 (303-374)||(43282852-43282923)
chr8 (307-377)||(2271248-2271318)
[»] chr3 (25 HSPs)
chr3 (254-377)||(21853250-21853373)
chr3 (254-377)||(44994920-44995044)
chr3 (254-377)||(8950456-8950579)
chr3 (254-377)||(13856152-13856275)
chr3 (254-377)||(40845869-40845992)
chr3 (254-377)||(5391510-5391633)
chr3 (278-377)||(32352900-32352999)
chr3 (254-377)||(20382572-20382693)
chr3 (254-377)||(36539685-36539808)
chr3 (254-377)||(1781815-1781938)
chr3 (254-377)||(43347288-43347411)
chr3 (292-377)||(3178756-3178841)
chr3 (289-377)||(10839367-10839455)
chr3 (315-377)||(23467507-23467569)
chr3 (290-377)||(19649360-19649447)
chr3 (254-367)||(27642723-27642836)
chr3 (307-377)||(54546957-54547027)
chr3 (307-375)||(8926821-8926889)
chr3 (302-377)||(22845362-22845437)
chr3 (288-377)||(46685770-46685858)
chr3 (288-373)||(6280345-6280430)
chr3 (332-377)||(47889779-47889824)
chr3 (307-378)||(50663186-50663257)
chr3 (307-366)||(33103807-33103866)
chr3 (305-364)||(36825965-36826024)
[»] chr6 (15 HSPs)
chr6 (254-377)||(9231806-9231929)
chr6 (254-377)||(24694603-24694726)
chr6 (254-377)||(13627593-13627716)
chr6 (255-377)||(14309752-14309873)
chr6 (282-377)||(1727913-1728008)
chr6 (255-374)||(24497527-24497646)
chr6 (254-377)||(28750602-28750725)
chr6 (254-356)||(11084664-11084765)
chr6 (303-377)||(13103119-13103193)
chr6 (307-377)||(34103738-34103808)
chr6 (302-377)||(27863752-27863828)
chr6 (254-322)||(34383363-34383431)
chr6 (338-377)||(8412717-8412756)
chr6 (336-377)||(11212724-11212765)
chr6 (290-330)||(34088790-34088830)
[»] chr1 (23 HSPs)
chr1 (254-377)||(47022755-47022878)
chr1 (254-377)||(42517246-42517373)
chr1 (257-377)||(5975041-5975161)
chr1 (254-377)||(7742731-7742854)
chr1 (254-377)||(49902521-49902644)
chr1 (254-374)||(48392358-48392478)
chr1 (254-377)||(10155968-10156091)
chr1 (254-373)||(38859908-38860027)
chr1 (254-377)||(3346839-3346962)
chr1 (254-377)||(23908338-23908451)
chr1 (254-377)||(29149510-29149623)
chr1 (302-377)||(42456625-42456700)
chr1 (289-377)||(10907635-10907723)
chr1 (281-373)||(37189697-37189788)
chr1 (255-377)||(5558362-5558483)
chr1 (293-377)||(30745397-30745481)
chr1 (293-377)||(30766848-30766932)
chr1 (307-365)||(26835403-26835461)
chr1 (259-365)||(26511591-26511696)
chr1 (309-377)||(13131949-13132017)
chr1 (290-364)||(44107379-44107450)
chr1 (308-377)||(14796929-14796998)
chr1 (308-377)||(14805803-14805872)
[»] scaffold0079 (1 HSPs)
scaffold0079 (254-377)||(54572-54695)
[»] scaffold0086 (1 HSPs)
scaffold0086 (307-373)||(20836-20902)
[»] scaffold0045 (1 HSPs)
scaffold0045 (307-377)||(34457-34527)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 53958913 - 53958684
Alignment:
Q  30 cgattcccctaaaaattcaagaagataaattaaatgagaagtattttagaattattata--------ttggataaataagtaaatttactaatatttcat 121  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||    
T  53958913 cgattcacctaaaaattcaagaagttaaattaaatgagaagtattttagaattatcataactaaatattggataaataagtaaatttactaatatttcat 53958814  T
Q  122 tcnnnnnnncctgatgtaaaatttgtttataataaaatgaattttgtaaagtaaaaatatgagtcgtttgatgttgattcaatggtagagattcaataat 221  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53958813 tcaaaaaaacctgatgtaaaatttgtttataataaaatgaattttgtaaagtaaaaatatgagtcgtttgatgttgattcaatggtagagattcaataat 53958714  T
Q  222 tgcatgacgacatacagaggagctaacatg 251  Q
    ||||||||||||||||||||||||||||||    
T  53958713 tgcatgacgacatacagaggagctaacatg 53958684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 1535947 - 1535824
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 1535848  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  1535847 ccctataaattgggcaatttcttt 1535824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 49284530 - 49284410
Alignment:
Q  257 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 356  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49284530 cggttctaaggcccagcgaacccgggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 49284431  T
Q  357 tataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||    
T  49284430 tataaattgggcaatttcttt 49284410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 36012138 - 36012260
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36012138 gggcggttctaaggcccggcgaccctgggcactcgtc-gggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 36012236  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  36012237 ccctataaattgggcaatttcttt 36012260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 17888502 - 17888625
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||| |    
T  17888502 gggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataacc 17888601  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  17888602 ccctataaattgggcaatttcttt 17888625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 31377565 - 31377443
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  31377565 gggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataacc 31377467  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    | ||||||||||||||||||||||    
T  31377466 ctctataaattgggcaatttcttt 31377443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 35019111 - 35018989
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  35019111 gggcggttctaaggcccggcgaccctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaat-cctatgaatttcttatataaac 35019013  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    || |||||||| || |||||||||    
T  35019012 ccttataaattaggtaatttcttt 35018989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 36851342 - 36851446
Alignment:
Q  257 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 356  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36851342 cggttttaaggcccagcgaccccgggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccc 36851441  T
Q  357 tataa 361  Q
    |||||    
T  36851442 tataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 11054631 - 11054509
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  11054631 gggcggttctatggcccggcgaccccgagcactcacccgggctccggtccaa-ttttttgcaatttcttatgtaaatccctatgaatttcttatataaac 11054533  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    | |||||||||||||||| |||||    
T  11054532 ctctataaattgggcaatctcttt 11054509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 16338165 - 16338288
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||     
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 16338264  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  16338265 ccctataaattggacaatttcttt 16338288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 34241134 - 34241046
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241134 cccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttcttt 34241046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 25954891 - 25954803
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  25954891 cccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttcttt 25954803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 373
Target Start/End: Complemental strand, 20818743 - 20818624
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| |  |||||||| |||||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20818743 gggcggttctatgatccggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaac 20818644  T
Q  354 ccctataaattgggcaattt 373  Q
     |||||||||||| ||||||    
T  20818643 tcctataaattggtcaattt 20818624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 37801216 - 37801339
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||| ||| | | |||| ||| ||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||||||     
T  37801216 gggcggttctaaggcccgacgatctcaggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaat 37801315  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||| ||||||    
T  37801316 ccctataaattgggcaaattcttt 37801339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 377
Target Start/End: Original strand, 46583508 - 46583616
Alignment:
Q  259 gttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccta 358  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||          |||||||||||||||||||||||||||||||||||    
T  46583508 gttctaaggtccggcgaccccgggcactcgcccgggctccgggtcaaattttttg----------tgtaaatccctatgaatttcttatataaaccccta 46583597  T
Q  359 taaattgggcaatttcttt 377  Q
    |||||| ||||||||||||    
T  46583598 taaattaggcaatttcttt 46583616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 52632680 - 52632571
Alignment:
Q  258 ggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccct 357  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||          ||||||||||||||||||||||||||||||||| ||||    
T  52632680 ggttctaaggcccggtgaccccgggcacttgcctgggctccgggccaaattt----------cttgtgtaaatccctatgaatttcttatataaatccct 52632591  T
Q  358 ataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||    
T  52632590 ataaattgggcaatttcttt 52632571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 377
Target Start/End: Complemental strand, 47084163 - 47084065
Alignment:
Q  279 cgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||| | || ||||||||| | ||||||||||||||||||| |||||||  || |||||||||||||||||||||||||||||||| |||||||||    
T  47084163 cgggcacgcacctgggctccggcctaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttcttt 47084065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 12792200 - 12792306
Alignment:
Q  271 ggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaa 370  Q
    ||||| ||||||||| || |||||||  || |||| ||||||| |||||||| |||||||  || |||||||||||||||||||||||||||||||||||    
T  12792200 ggcgatcccgggcacgcgtccgggctttggcccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaa 12792299  T
Q  371 tttcttt 377  Q
    || ||||    
T  12792300 ttacttt 12792306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 46474136 - 46474047
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||||  ||||||||||    
T  46474136 gcccgagctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttcttt 46474047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 9742538 - 9742608
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttcttt 9742608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 10094387 - 10094464
Alignment:
Q  296 tccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 373  Q
    ||||| |||||||||||| |||||||| |||||||  || |||||||||||||||||||||||||||||||| |||||    
T  10094387 tccggcccaaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaattt 10094464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 50328938 - 50328849
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||| ||  ||| |||||||||||||||| ||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  50328938 gcccgggctctggctcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttcttt 50328849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 377
Target Start/End: Original strand, 322509 - 322624
Alignment:
Q  267 gcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttg-tgtaaatccctatgaa----tttcttatataaacccctataa 361  Q
    ||||||||| ||||||||| ||||||||||  |  |||||||||||||||||| ||  ||||||| ||| ||||    ||||||||||||||||||||||    
T  322509 gcccggcgatcccgggcacgcgcccgggctatgacccaaattttttgcaattttttaatgtaaattcctctgaaggaatttcttatataaacccctataa 322608  T
Q  362 attgggcaatttcttt 377  Q
    ||||| ||||||||||    
T  322609 attggacaatttcttt 322624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 19124691 - 19124813
Alignment:
Q  255 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 354  Q
    ||||||||||||| |||||||  |  |||| | || |||||||||| | || |||||||||||||||| ||||||| ||| ||||||||||||||||||     
T  19124691 ggcggttctaaggtccggcgagtctaggcagttgcgcgggctccggcctaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaaca 19124790  T
Q  355 cctataaattgggcaatttcttt 377  Q
     || |||||||  ||||||||||    
T  19124791 tctgtaaattgatcaatttcttt 19124813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 54090307 - 54090237
Alignment:
Q  303 caaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 373  Q
    |||||||||||||||| ||| ||||||||||| ||||||| |||||||||| | |||||||||||||||||    
T  54090307 caaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaattt 54090237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 377
Target Start/End: Original strand, 5780716 - 5780829
Alignment:
Q  253 agggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 352  Q
    ||||||||||||||||||| |||  | ||||| | |||||| || ||| |||| |||||||||||||||| |||           |||||||||||||||    
T  5780716 agggcggttctaaggcccgacgagtctgggcagttgcccggacttcggcccaatttttttgcaatttcttatgt-----------aatttcttatataaa 5780804  T
Q  353 cccctataaattgggcaatttcttt 377  Q
     || |||||||||||||||||||||    
T  5780805 tccttataaattgggcaatttcttt 5780829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 33982130 - 33982057
Alignment:
Q  304 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||  |||||||| ||||||||||| | |||||||||||||||| | |||||||| |  |||||||||    
T  33982130 aaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttcttt 33982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 351
Target Start/End: Complemental strand, 45784099 - 45784003
Alignment:
Q  255 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 351  Q
    ||||||||||||| ||||||| ||| | || | | |  |||||||| |||| ||||||||||||||||   ||||||||| |||||||||| |||||    
T  45784099 ggcggttctaaggtccggcgagcccagacagttgtcatggctccggcccaatttttttgcaatttcttagttaaatccctctgaatttcttctataa 45784003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 25954915 - 25954885
Alignment:
Q  253 agggcggttctaaggcccggcgaccccgggc 283  Q
    |||||||||||||||||||||||||||||||    
T  25954915 agggcggttctaaggcccggcgaccccgggc 25954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Complemental strand, 34241157 - 34241128
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggc 283  Q
    ||||||||||||||||||||||||||||||    
T  34241157 gggcggttctaaggcccggcgaccccgggc 34241128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 42769710 - 42769833
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42769809  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  42769810 ccctataaattgggcaatttcttt 42769833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 14941996 - 14942119
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14941996 gggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 14942095  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  14942096 ccctataaattgggcaatttcttt 14942119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 29846618 - 29846495
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29846519  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  29846518 ccctataaattggacaatttcttt 29846495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 14186390 - 14186513
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 14186489  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  14186490 ccctataaattgggcaatttcttt 14186513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 19181724 - 19181601
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19181724 gggcggttctaaggcccggcgaccccggacactcgcctgggctatgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 19181625  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  19181624 ccctataaattgggcaatttcttt 19181601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 40277240 - 40277363
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||     
T  40277240 gggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaat 40277339  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  40277340 ccctataaattgggcaatttcttt 40277363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 3597842 - 3597929
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatt 341  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3597842 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 3956748 - 3956625
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||   ||| |||||| || ||||||||||||||||||| ||||||||||    
T  3956748 gggcggttctatggcccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaac 3956649  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    |||| |||||||| ||||||||||    
T  3956648 ccctgtaaattggacaatttcttt 3956625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 281 - 377
Target Start/End: Original strand, 6318436 - 6318533
Alignment:
Q  281 ggcactcgcccgggctccgggccaaattttttg-caatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||  |||||||| |||| ||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6318436 ggcactcgcctaggctccggcccaatttttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttt 6318533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 43139882 - 43139800
Alignment:
Q  295 ctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||| |||| |||||||||||||||| ||||| | ||| | |||||||||||||||||||||||||||| |||||||||||    
T  43139882 ctccggtccaatttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttcttt 43139800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 14539704 - 14539779
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||| ||||| | ||| |||||||||||||||||  |||||||||| ||||||||||||    
T  14539704 ccaaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttcttt 14539779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 33009799 - 33009726
Alignment:
Q  304 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||| ||||||||| | ||||||||||||||||| ||||||||| || |||||||||| ||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttcttt 33009726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 1386114 - 1386190
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaat 330  Q
    ||||||||||| ||| || ||||||||||||||||||||||||| |  |||| |||||||||||||||| |||||||    
T  1386114 gggcggttctatggctcgacgaccccgggcactcgcccgggctcggacccaatttttttgcaatttcttatgtaaat 1386190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 1387312 - 1387363
Alignment:
Q  326 taaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttcttt 1387363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 28321703 - 28321780
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttga 379  Q
    |||| |||||||||||||||| ||||||| |   ||||| |||||||||||||| |||||||||||||||||| ||||    
T  28321703 ccaatttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattga 28321780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 41674716 - 41674781
Alignment:
Q  312 tgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||| |||||||| || ||||||| |||||||||||| |||||||||| ||||||||||    
T  41674716 tgcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttcttt 41674781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 2888164 - 2888106
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 365  Q
    ||||||| |||||||| |||||||| |||||||||| |||||||||| |||||||||||    
T  2888164 ttttttgtaatttcttatgtaaatctctatgaattttttatataaactcctataaattg 2888106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 40780179 - 40780112
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac-ccctataaattgggcaattt 373  Q
    ||||||| |||||||| ||||||| ||| |||||||||||||||||| ||||||||||| | ||||||    
T  40780179 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaattt 40780112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 28321667 - 28321699
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcact 286  Q
    |||||||||||||||||||||| ||||||||||    
T  28321667 gggcggttctaaggcccggcgagcccgggcact 28321699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 38397773 - 38397651
Alignment:
Q  255 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38397773 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T
Q  355 cctataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||||    
T  38397673 cctataaattgggcaatttcttt 38397651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 6257362 - 6257485
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaac 6257461  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  6257462 ccctataaattgggcaatttcttt 6257485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 37168985 - 37169108
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 37169084  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  37169085 ccctataaattgggcaatttcttt 37169108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 23218661 - 23218538
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23218661 gggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 23218562  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  23218561 ccctataaattgggcaatttcttt 23218538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 39862439 - 39862562
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 39862538  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  39862539 ccctataaattgggcaatttcttt 39862562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 373
Target Start/End: Original strand, 16618522 - 16618641
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16618522 gggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaac 16618621  T
Q  354 ccctataaattgggcaattt 373  Q
     |||||||||||| ||||||    
T  16618622 tcctataaattggacaattt 16618641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 15631790 - 15631666
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa- 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||     
T  15631790 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaac 15631691  T
Q  353 cccctataaattgggcaatttcttt 377  Q
    |||||||||||||| ||||||||||    
T  15631690 cccctataaattggacaatttcttt 15631666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 8456915 - 8457038
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  8456915 gggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataacc 8457014  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  8457015 ccctataaattgggcaatttcttt 8457038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 10081323 - 10081198
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttg--caatttcttgtgtaaatccctatgaatttcttatataa 351  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||| || |||| ||||||   ||||||||| ||||||||||||||||||||||||||||    
T  10081323 gggcggttctatggcccggcgatcccaggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaatccctatgaatttcttatataa 10081224  T
Q  352 acccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||||    
T  10081223 acccctataaattgggcaatttcttt 10081198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25560284 - 25560402
Alignment:
Q  258 ggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccct 357  Q
    ||||||| |||||||| ||||||| |||||| |||||||||||  ||| |||||| ||||||||| ||||||||| ||| ||||||||||||||||  ||    
T  25560284 ggttctatggcccggcaaccccggccactcgtccgggctccggctcaattttttt-caatttcttatgtaaatccttataaatttcttatataaacatct 25560382  T
Q  358 ataaattgggcaatttcttt 377  Q
    ||||||||| ||||||||||    
T  25560383 ataaattggacaatttcttt 25560402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 372
Target Start/End: Original strand, 29491369 - 29491483
Alignment:
Q  257 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 356  Q
    |||||| | |||||||||||||||| |||||| ||||||| | | |||||| |||||||||||||| |||||||  ||||||||||||||||| ||||||    
T  29491369 cggttcgatggcccggcgaccccggacactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccc 29491467  T
Q  357 tataaattgggcaatt 372  Q
    |||||||||| |||||    
T  29491468 tataaattggacaatt 29491483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 263 - 377
Target Start/End: Original strand, 36769035 - 36769149
Alignment:
Q  263 taaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaa 362  Q
    ||||| |||| || ||| |||||| | |||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |||| ||    
T  36769035 taaggtccggtgagcccaggcacttgtccggactccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaa 36769134  T
Q  363 ttgggcaatttcttt 377  Q
    || ||||||||||||    
T  36769135 ttaggcaatttcttt 36769149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 42119798 - 42119675
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||  |||| ||||||| || ||||| ||| ||||||||    || ||||||||| |||||||| ||||||| ||| ||||||||||||||||||    
T  42119798 gggcggtttgaaggtccggcgagccggggcagtcgtccgggctctaacccgaattttttgtaatttcttatgtaaattcctctgaatttcttatataaac 42119699  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    | ||||||||||| ||||||||||    
T  42119698 ctctataaattggacaatttcttt 42119675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 27916266 - 27916196
Alignment:
Q  304 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttc 374  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttc 27916196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 11856437 - 11856348
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||| ||| |||| |||| || |||||||| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||    
T  11856437 gcccgggcttcggcccaagttttctgtaatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttcttt 11856348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 33271256 - 33271345
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||| |||||| |||| |||||| ||||||||| ||||||| ||  ||||||||||||||||||| ||||||||||| ||||||||||    
T  33271256 gcccggactccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttcttt 33271345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 10115301 - 10115213
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||| |||| ||||||||||||| || ||||||| ||| || |||||||||||||||||| ||||||| | ||||||||||    
T  10115301 cccgggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttcttt 10115213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 29790219 - 29790294
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| ||||| ||||||||| ||||||| | |||||||||||||||||||||  |||||||||||||||||||||    
T  29790219 ccaaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttt 29790294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 614397 - 614467
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| ||||||| ||| ||||||| ||||||||| ||||||||||| ||||||||||||    
T  614397 ttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttcttt 614467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 9737981 - 9738058
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaa--tccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||| |||||| ||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  9737981 ccaattttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttcttt 9738058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 377
Target Start/End: Original strand, 10052489 - 10052575
Alignment:
Q  291 cgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||| |||| |||||| ||||||||| ||||||||||| |||| | |||||||||||  ||||||||| || |||||||||    
T  10052489 cgggctccggcccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttcttt 10052575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 6174874 - 6174797
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa--cccctataaattgggcaatttcttt 377  Q
    |||||||||||| ||||||||  |||||| | | |||||||||||||||||  |||||||||||||| ||||||||||    
T  6174874 ccaaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttcttt 6174797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 3341111 - 3341195
Alignment:
Q  293 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaa-tttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| || ||||||||||||||||||||| |||||||  || |||| ||| |||||||| ||||||||||||||| |||||||||    
T  3341111 ggctctggcccaaattttttgcaatttcttatgtaaat-tctctgaatttttttatataatcccctataaattgggaaatttcttt 3341195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 33188330 - 33188383
Alignment:
Q  309 ttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaa 362  Q
    |||||||||||||| ||||||| | | | |||||||||||||||||||||||||    
T  33188330 ttttgcaatttcttatgtaaattcatctaaatttcttatataaacccctataaa 33188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 2676500 - 2676555
Alignment:
Q  281 ggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctat 336  Q
    ||||||||||||||||| || |||| |||||| ||||||||| |||||| ||||||    
T  2676500 ggcactcgcccgggctctggtccaattttttttcaatttcttatgtaaacccctat 2676555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 19322058 - 19322097
Alignment:
Q  338 aatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  19322058 aatttcttatataaactcctataaattgggcaattacttt 19322097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 34707292 - 34707169
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34707193  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  34707192 ccctataaattgggcaatttcttt 34707169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 10576849 - 10576726
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10576849 gggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 10576750  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  10576749 ccctataaattgggcaatttcttt 10576726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 34259694 - 34259571
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34259595  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  34259594 ccctataaattgggcaatttcttt 34259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 44164695 - 44164818
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaac 44164794  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  44164795 ccctataaattgggcaatttcttt 44164818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 29238095 - 29238218
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29238194  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||| |||||||  |||||||||    
T  29238195 ccctaaaaattggaaaatttcttt 29238218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 29981065 - 29981188
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  29981065 gggcggttctaagacccggcgacctcgggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29981164  T
Q  354 ccctataaattgggcaatttcttt 377  Q
      ||||||||||| ||||||||||    
T  29981165 ttctataaattggacaatttcttt 29981188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 29555891 - 29556014
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |||||  ||||||||||||||||| ||||||||||||||||||||||    
T  29555891 gggcggttctatggcccagcgaccctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaac 29555990  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  29555991 ccctataaattggacaatttcttt 29556014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 24320426 - 24320514
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  24320426 cccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttcttt 24320514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 19334512 - 19334635
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| |||||||||||||||| ||||| ||| || | ||| |||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  19334512 gggcggttctatggcccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaac 19334611  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  19334612 ccctataaattggacaatttcttt 19334635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 377
Target Start/End: Original strand, 32876523 - 32876605
Alignment:
Q  295 ctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32876523 ctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttcttt 32876605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 17303101 - 17303189
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||  |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  17303101 cccgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttcttt 17303189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 33057644 - 33057732
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  33057644 cccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttcttt 33057732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 10334322 - 10334231
Alignment:
Q  286 tcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||| || |||| |||||||||||||||| ||||||| ||| |||||||||||||||||| | |||||||||||||||||||||    
T  10334322 tcgcccgggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttcttt 10334231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 9770830 - 9770712
Alignment:
Q  260 ttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaatttttt-gcaatttcttgtgtaaatccctatgaatttcttatataaaccccta 358  Q
    |||||||||||||||| || ||||||| |||||| || ||| |||| |||||| |||||||||| ||||||||    ||||||||||||||||||| |||    
T  9770830 ttctaaggcccggcgagcctgggcacttgcccggacttcggcccaattttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccacta 9770731  T
Q  359 taaattgggcaatttcttt 377  Q
    | |||||| ||||||||||    
T  9770730 tgaattggacaatttcttt 9770712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 15017896 - 15017826
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||| | |||||||||| ||||||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttcttt 15017826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 2702188 - 2702280
Alignment:
Q  258 ggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatata 350  Q
    |||||||| ||||||||| |||| ||||| ||||||||||||| |||| ||||||||||||| || | ||||| ||  ||||| |||||||||    
T  2702188 ggttctaatgcccggcgagcccgtgcacttgcccgggctccggcccaagttttttgcaattttttatctaaattcccctgaatatcttatata 2702280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 41853260 - 41853205
Alignment:
Q  281 ggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctat 336  Q
    |||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||    
T  41853260 ggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaattcctat 41853205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 43342533 - 43342485
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccc 355  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaaccc 43342485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 26284383 - 26284453
Alignment:
Q  307 ttttttgcaatttcttgtgt-aaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| ||| |||||||| ||||||||||||| ||||   |||||||||| ||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttata-aaactagtataaattggacaatttcttt 26284453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 23032104 - 23032164
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaa 362  Q
    ||||| ||||| |||||| || ||||||||||| |||| || ||||||||||| |||||||    
T  23032104 ccaaaatttttacaattttttatgtaaatccctctgaaatttttatataaacctctataaa 23032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 22324772 - 22324649
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22324772 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 22324673  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  22324672 ccctataaattgggcaatttcttt 22324649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 35806970 - 35806847
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 35806871  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  35806870 ccctataaattgggcaatttcttt 35806847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 42072604 - 42072481
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42072505  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  42072504 ccctataaattggacaatttcttt 42072481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 253 - 377
Target Start/End: Complemental strand, 21525535 - 21525411
Alignment:
Q  253 agggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 352  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21525535 agggcggttctaaggcccggtgaccccgggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 21525436  T
Q  353 cccctataaattgggcaatttcttt 377  Q
    |||||||||||||| ||||||||||    
T  21525435 cccctataaattggacaatttcttt 21525411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 373
Target Start/End: Original strand, 33934321 - 33934440
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  33934321 gggcggttttaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaac 33934420  T
Q  354 ccctataaattgggcaattt 373  Q
    ||||||||||||||||||||    
T  33934421 ccctataaattgggcaattt 33934440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 42014048 - 42013925
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42014048 gggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42013949  T
Q  354 ccctataaattgggcaatttcttt 377  Q
     |||||||||||||||||||||||    
T  42013948 tcctataaattgggcaatttcttt 42013925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 26021573 - 26021449
Alignment:
Q  254 gggcggttctaaggccc-ggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 352  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26021573 gggcggttctaaggccccggtgaccccgggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaa 26021474  T
Q  353 cccctataaattgggcaatttcttt 377  Q
    ||||||||||||||| |||||||||    
T  26021473 cccctataaattgggtaatttcttt 26021449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 266 - 377
Target Start/End: Complemental strand, 16523270 - 16523159
Alignment:
Q  266 ggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 365  Q
    ||||||||||| |||| ||||||| |||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||    
T  16523270 ggcccggcgacgccggacactcgctcgggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaattg 16523171  T
Q  366 ggcaatttcttt 377  Q
    ||||| ||||||    
T  16523170 ggcaacttcttt 16523159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 16818939 - 16819046
Alignment:
Q  268 cccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggg 367  Q
    |||||||| |||||| | ||||||  |||| || ||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||    
T  16818939 cccggcgagcccgggtagtcgcccaagctctggcccaaattttttgcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattggg 16819038  T
Q  368 caatttct 375  Q
     |||||||    
T  16819039 taatttct 16819046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 10112223 - 10112100
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||| || || || | |||||||||| ||  ||| ||||||||||||| || ||||||| ||| | ||||||||||||||||    
T  10112223 gggcggttctaaggcccggcgagcctggacagttgcccgggctctggctcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaac 10112124  T
Q  354 ccctataaattgggcaatttcttt 377  Q
     | |||||||||| ||||||||||    
T  10112123 tcttataaattggacaatttcttt 10112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 16591361 - 16591449
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctt 376  Q
    ||||||| ||||| | ||||||||||||||||||| |||||||  ||| |||||||||||||||| | |||||||||||||||||||||    
T  16591361 gcccgggttccggcctaaattttttgcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 377
Target Start/End: Complemental strand, 21488231 - 21488119
Alignment:
Q  265 aggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatt 364  Q
    ||||| |||||||||||||||||| |||||||| |  | |||  ||||  |||||||||||||||| ||| ||||||||||||| ||||||| |||||||    
T  21488231 aggcctggcgaccccgggcactcgtccgggctctgtcctaaagcttttataatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaatt 21488132  T
Q  365 gggcaatttcttt 377  Q
    || ||||||||||    
T  21488131 ggacaatttcttt 21488119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 24065410 - 24065326
Alignment:
Q  293 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| ||||||||  |||||||||||||  | |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  24065410 ggctctgggccaaaacttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttcttt 24065326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 19334917 - 19334836
Alignment:
Q  296 tccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| ||||||||||||||||||||| | ||||| | ||||||||| ||||||||||| ||||||||| | ||||||||||    
T  19334917 tccggcccaaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttcttt 19334836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 370
Target Start/End: Original strand, 2824167 - 2824250
Alignment:
Q  287 cgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaa 370  Q
    |||||||||||||  |  ||||||||||||||| || ||||||| ||| | |||||||||||||| ||| ||||||||||||||    
T  2824167 cgcccgggctccgacctgaattttttgcaattttttatgtaaattcctctaaatttcttatataaccccttataaattgggcaa 2824250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 374
Target Start/End: Original strand, 43282852 - 43282923
Alignment:
Q  303 caaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttc 374  Q
    |||||||||| ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||||| ||||||    
T  43282852 caaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttc 43282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 2271318 - 2271248
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| ||||||||    ||||||||||||||||||||||||| ||| || |||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttcttt 2271248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 21853373 - 21853250
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaa 21853274  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  21853273 ccctataaattgggcaatttcttt 21853250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 44994920 - 44995044
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44994920 gggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 44995019  T
Q  354 ccc-tataaattgggcaatttcttt 377  Q
    ||| |||||||||||||||||||||    
T  44995020 cccttataaattgggcaatttcttt 44995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 8950456 - 8950579
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaat 8950555  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  8950556 ccctataaattgggcaatttcttt 8950579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 13856275 - 13856152
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  13856275 gggcggttctaaggcccggcgacccagggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaat 13856176  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  13856175 ccctataaattggacaatttcttt 13856152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 40845869 - 40845992
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40845869 gggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 40845968  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  40845969 ccctataaattgggcaatttcttt 40845992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 5391633 - 5391510
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  5391633 gggcggttctatggcccggcgaccctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaac 5391534  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  5391533 ccctataaattggacaatttcttt 5391510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 32352999 - 32352900
Alignment:
Q  278 ccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32352999 ccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttcttt 32352900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 20382693 - 20382572
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  20382693 gggcggttctatggcc-ggcgaccccgggcacttgcccgggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataaac 20382596  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    |||||||||||||| |||||||||    
T  20382595 ccctataaattgggaaatttcttt 20382572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 36539808 - 36539685
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||| ||||| | |||||| ||||||||||||||| | ||||||| ||||||||||| ||||||||||||| |||||||||||||| |    
T  36539808 gggcggttctaaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatc 36539709  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  36539708 ccctataaattgggcaatttcttt 36539685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 1781938 - 1781815
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||  |||||||||||| |||| ||| |||||| ||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  1781938 gggcggtttcaaggcccggcgagcccgtgcagtcgcccaggctctggcccaaattttttgcaatttcttatgtaaatccctctgaatttcttatataaac 1781839  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||| ||||||||||||||||||||    
T  1781838 cccaataaattgggcaatttcttt 1781815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 43347288 - 43347411
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||| |||||||| |  ||||| | | ||||||||||  ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  43347288 gggcggttctaagacccggcgagcttgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaac 43347387  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||| ||||||||||||||||||    
T  43347388 ccctacaaattgggcaatttcttt 43347411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 377
Target Start/End: Complemental strand, 3178841 - 3178756
Alignment:
Q  292 gggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  3178841 gggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttcttt 3178756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 10839367 - 10839455
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||  ||||||||||||||||||||| |||||||  || ||||||||||||||||||| ||||||||||||||||||||||    
T  10839367 cccgggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttcttt 10839455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 23467507 - 23467569
Alignment:
Q  315 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 23467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 19649360 - 19649447
Alignment:
Q  290 ccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||  ||| ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  19649360 ccgggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttcttt 19649447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 254 - 367
Target Start/End: Complemental strand, 27642836 - 27642723
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||| ||||||||||||||||| |  ||||| | ||| ||||||| |  |||||||||||||||||||| ||||||||| | |||||||||||||||||     
T  27642836 gggcagttctaaggcccggcgagcttgggcagttgcctgggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaat 27642737  T
Q  354 ccctataaattggg 367  Q
    || |||||||||||    
T  27642736 ccttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 54547027 - 54546957
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttcttt 54546957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 8926889 - 8926821
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttct 375  Q
    |||||||||||||| | ||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||    
T  8926889 ttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttct 8926821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 22845362 - 22845437
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||| ||||||| |   | ||||||||||||||||||||||||||| | ||||||||||    
T  22845362 ccaaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttcttt 22845437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 46685770 - 46685858
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||| | |||| |||||||||||||| |||||| ||||||||||  | |||||||||||||||| |||||||||| | ||||||||||    
T  46685770 gcccggacgccggcccaaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttcttt 46685858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 373
Target Start/End: Original strand, 6280345 - 6280430
Alignment:
Q  288 gcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 373  Q
    |||||| |||||| | ||||||| ||||||||||| |||||||  |  ||||||||||||||||||| ||||||||| | ||||||    
T  6280345 gcccggactccggcctaaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaattt 6280430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 47889824 - 47889779
Alignment:
Q  332 cctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  47889824 cctatgaatttcttatataaattcctataaattgggcaatttcttt 47889779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 50663257 - 50663186
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttg 378  Q
    |||||||||||||||| |||| || ||| | |||||||||||||||||| |||||||||   ||||||||||    
T  50663257 ttttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattgaaaaatttctttg 50663186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 33103866 - 33103807
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgg 366  Q
    |||||||||||||||| ||||||| ||  | ||||||||||||||  |||||||||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattgg 33103807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 36825965 - 36826024
Alignment:
Q  305 aattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatt 364  Q
    |||||||||||||||||| |||||| | || | ||||||| |||||||||| ||||||||    
T  36825965 aattttttgcaatttcttatgtaaacctctttaaatttctcatataaacccttataaatt 36826024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 9231806 - 9231929
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 9231905  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  9231906 ccctataaattgggcaatttcttt 9231929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 24694603 - 24694726
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694603 gggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 24694702  T
Q  354 ccctataaattgggcaatttcttt 377  Q
     |||||||||||||||||||||||    
T  24694703 tcctataaattgggcaatttcttt 24694726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 13627716 - 13627593
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 13627617  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    |||||||||||| |||||||||||    
T  13627616 ccctataaattgagcaatttcttt 13627593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 14309752 - 14309873
Alignment:
Q  255 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 354  Q
    ||||||| ||||||||||||||||| | |||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14309752 ggcggttataaggcccggcgaccccagacactcgcccggtttc-gggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatc 14309850  T
Q  355 cctataaattgggcaatttcttt 377  Q
    |||||||||||||||||||||||    
T  14309851 cctataaattgggcaatttcttt 14309873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 282 - 377
Target Start/End: Original strand, 1727913 - 1728008
Alignment:
Q  282 gcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1727913 gcactcgcccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttcttt 1728008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 374
Target Start/End: Original strand, 24497527 - 24497646
Alignment:
Q  255 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 354  Q
    |||||||||||||| |||||| || ||||| | || | |||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  24497527 ggcggttctaaggctcggcgagcctgggcagttgcacaggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacc 24497626  T
Q  355 cctataaattgggcaatttc 374  Q
    ||||||||||||||||||||    
T  24497627 cctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 28750602 - 28750725
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||  | ||||| | || ||||||| ||||||| |||||||||||||||| ||||||| | | ||||||||||||||||||    
T  28750602 gggcggttctaaggcccggcgagtctgggcaattgctcgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaac 28750701  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  28750702 ccctataaattgggcaatttcttt 28750725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 11084765 - 11084664
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11084765 gggcggttctaaggcccggtgaccccgggca-tcgcccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 11084667  T
Q  354 ccc 356  Q
    |||    
T  11084666 ccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 13103119 - 13103193
Alignment:
Q  303 caaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||| || ||||||| ||| |||||||||||||||||||  |||||||||||||||||||||    
T  13103119 caaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttcttt 13103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 34103808 - 34103738
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||| ||||| || ||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||    
T  34103808 ttttttgtaatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttcttt 34103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 27863828 - 27863752
Alignment:
Q  302 ccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||| |||||||||| ||||||||||    
T  27863828 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttcttt 27863752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 34383363 - 34383431
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttctt 322  Q
    ||||||||||| |||| |||||||||||| | ||||||||||||||| | |||||||| ||||||||||    
T  34383363 gggcggttctatggcctggcgaccccgggtattcgcccgggctccggcctaaatttttcgcaatttctt 34383431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 8412717 - 8412756
Alignment:
Q  338 aatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttcttt 8412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 11212765 - 11212724
Alignment:
Q  336 tgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||| || |||||| ||||||||||||||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttcttt 11212724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 34088830 - 34088790
Alignment:
Q  290 ccgggctccgggccaaattttttgcaatttcttgtgtaaat 330  Q
    ||||||||||| |||||||||||| |||||||| |||||||    
T  34088830 ccgggctccggcccaaattttttgtaatttcttatgtaaat 34088790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 47022878 - 47022755
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 47022779  T
Q  354 ccctataaattgggcaatttcttt 377  Q
     |||||||||| ||||||||||||    
T  47022778 tcctataaattaggcaatttcttt 47022755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 42517246 - 42517373
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatat---- 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42517345  T
Q  350 aaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||||||    
T  42517346 aaacccctataaattgggcaatttcttt 42517373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 5975161 - 5975041
Alignment:
Q  257 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  5975161 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccc 5975062  T
Q  357 tataaattgggcaatttcttt 377  Q
    |||||||| ||||||||||||    
T  5975061 tataaattaggcaatttcttt 5975041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 7742731 - 7742854
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7742731 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaac 7742830  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  7742831 ccctataaattgggcaatttcttt 7742854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 49902644 - 49902521
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902644 gggcggttctaaggtccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 49902545  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    |||||||||| |||||||||||||    
T  49902544 ccctataaatagggcaatttcttt 49902521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 254 - 374
Target Start/End: Original strand, 48392358 - 48392478
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  48392358 gggcggttctaaggcccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaat 48392457  T
Q  354 ccctataaattgggcaatttc 374  Q
    |||||||||||||||||||||    
T  48392458 ccctataaattgggcaatttc 48392478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 10155968 - 10156091
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 10156067  T
Q  354 ccctataaattgggcaatttcttt 377  Q
      ||||||||||| ||||||||||    
T  10156068 ttctataaattggacaatttcttt 10156091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 254 - 373
Target Start/End: Complemental strand, 38860027 - 38859908
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  38860027 gggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaac 38859928  T
Q  354 ccctataaattgggcaattt 373  Q
    ||||||||||||||||||||    
T  38859927 ccctataaattgggcaattt 38859908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 3346962 - 3346839
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||| |||||||| || |||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3346962 gggcgattctaaggtccagcgatcccgggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaac 3346863  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  3346862 ccctataaattggacaatttcttt 3346839  T

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Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 23908451 - 23908338
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||||||     
T  23908451 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaatttt----------ttgtgtaaattcctatgaatttcttatataaat 23908362  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  23908361 ccctataaattggacaatttcttt 23908338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 29149510 - 29149623
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||||    
T  29149510 gggcggttttaaggcctggcgaccccaggcactcgcccgggctccggaccaaattttttg----------tgtaaatccctatgaatttcttatataaac 29149599  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||||||||||||||    
T  29149600 ccctataaattgggcaatttcttt 29149623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 42456700 - 42456625
Alignment:
Q  302 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42456700 ccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttt 42456625  T

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Target: chr1; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 10907635 - 10907723
Alignment:
Q  289 cccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||  | ||||||||||    
T  10907635 cccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttcttt 10907723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 37189788 - 37189697
Alignment:
Q  281 ggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 373  Q
    |||| |||||||| |||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  37189788 ggcattcgcccggactccggcccaaattttt-gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 5558483 - 5558362
Alignment:
Q  255 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 354  Q
    |||||||||||||||||   |  ||||||||| |||||| || ||| | || |||||||||||||||| |||||| || |  ||||||||||||||||||    
T  5558483 ggcggttctaaggcccgataagtccgggcacttgcccggtcttcggcctaatttttttgcaatttcttatgtaaa-ccttccgaatttcttatataaacc 5558385  T
Q  355 cctataaattgggcaatttcttt 377  Q
    |||||||||||| ||||||||||    
T  5558384 cctataaattggacaatttcttt 5558362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 30745481 - 30745397
Alignment:
Q  293 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||  |||||| ||||||||||| || |||||||  || |||||||||| |||||| ||||||||||||| ||||||||||    
T  30745481 ggctccgacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttcttt 30745397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 30766932 - 30766848
Alignment:
Q  293 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||  |||||| ||||||||||| || |||||||  || |||||||||| |||||| ||||||||||||| ||||||||||    
T  30766932 ggctccgacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttcttt 30766848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 26835461 - 26835403
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 365  Q
    ||||||||||||| || ||||||| | |||||||||||||||||||| |||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattg 26835403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 365
Target Start/End: Original strand, 26511591 - 26511696
Alignment:
Q  259 gttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccta 358  Q
    ||||||||| ||| |||  |||| || | ||||||||||||| | || |||||||||||||||| |||||| |||  |||||||||||||||||  |||     
T  26511591 gttctaaggtccgacgagtccggacatttgcccgggctccggcctaatttttttgcaatttcttatgtaaa-ccccctgaatttcttatataaattcctg 26511689  T
Q  359 taaattg 365  Q
    |||||||    
T  26511690 taaattg 26511696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 13132017 - 13131949
Alignment:
Q  309 ttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    ||||| |||||||| ||||||| ||| | ||||| ||||||||| | ||||||||||| ||||||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttcttt 13131949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 44107379 - 44107450
Alignment:
Q  290 ccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatt 364  Q
    ||||||||||| |||| ||||||||   ||||| ||||||| ||| ||| ||| |||||||||||||||||||||    
T  44107379 ccgggctccggtccaatttttttgc---ttcttatgtaaattcctctgatttttttatataaacccctataaatt 44107450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 14796998 - 14796929
Alignment:
Q  308 tttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||| || ||||||| ||| ||||||||||||||| || | |||||||| ||| ||| ||||    
T  14796998 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattacttt 14796929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 14805872 - 14805803
Alignment:
Q  308 tttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||| || ||||||| ||| ||||||||||||||| || | |||||||| ||| ||| ||||    
T  14805872 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattacttt 14805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 54695 - 54572
Alignment:
Q  254 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 353  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||     
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 54596  T
Q  354 ccctataaattgggcaatttcttt 377  Q
    ||||||||||||| ||||||||||    
T  54595 ccctataaattggacaatttcttt 54572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 20836 - 20902
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 373  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||| | ||||||||||| ||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaattt 20902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 34457 - 34527
Alignment:
Q  307 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 377  Q
    |||||||||||||||| ||||||||||| ||||||  ||||||||| | ||||||||||| || |||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttcttt 34527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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