View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_high_15 (Length: 259)
Name: NF2209_high_15
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31906061 - 31906281
Alignment:
| Q |
14 |
gaacaactagaagccttggttggaggatctgattggtttggttctggaagcagagttattattacaactagggacaaacatttgttgtcaagtcacgcgg |
113 |
Q |
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| T |
31906061 |
gaacaactggaggccttggttggaggattctattggcttggttctggaagcagagttattattacaactagggacaaacatttgttgtcaagtcacgggg |
31906160 |
T |
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| Q |
114 |
ttaagagaacatttgaagtaaatgtgttaagcgaaaaagatgctcttcgattgcttacatggaaagcttttaaaacagaaaaatttcatcctagttactt |
213 |
Q |
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|||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
31906161 |
ttaagagaacatatgaagtaaatgtgttaaacgagaaagatgctcttcggttgcttacatggaaagcttttaaaacagaagtatttcatcctagttattt |
31906260 |
T |
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| Q |
214 |
tgatgtgttgaagcgtgcagt |
234 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
31906261 |
tgatgtcttgaagcgtgcagt |
31906281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 35984306 - 35984526
Alignment:
| Q |
14 |
gaacaactagaagccttggttggaggatctgattggtttggttctggaagcagagttattattacaactagggacaaacatttgttgtcaagtcacgcgg |
113 |
Q |
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| T |
35984306 |
gaacagctagaggccttggttggagggtttgattggcttggttctggcagcagagttatcattacaactcgggacaaacatttgttggaaagtcatgggg |
35984405 |
T |
|
| Q |
114 |
ttaagagaacatttgaagtaaatgtgttaagcgaaaaagatgctcttcgattgcttacatggaaagcttttaaaacagaaaaatttcatcctagttactt |
213 |
Q |
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| T |
35984406 |
ttaatataacatatgaattacaggttttaaattagaaatacgctcttcaattgcttacttggaaatcttttaaaacagaaaaatttcatcctagttactt |
35984505 |
T |
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| Q |
214 |
tgatgtgttgaagcgtgcagt |
234 |
Q |
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|||| |||||||||||||| |
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| T |
35984506 |
gaatgtcttgaagcgtgcagt |
35984526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 16441091 - 16441181
Alignment:
| Q |
42 |
ctgattggtttggttctggaagcagagttattattacaactagggacaaacatttgttgtcaagtcacgcggttaagagaacatttgaagt |
132 |
Q |
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||||||||| |||| |||| ||||||||||| ||||||||| |||||||||| ||| | ||||||| | |||| | ||||||| |||||| |
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| T |
16441091 |
ctgattggtatggtcctggtagcagagttatcattacaactcgggacaaacagttgctagcaagtcatggggttgaaagaacatatgaagt |
16441181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 29523053 - 29523120
Alignment:
| Q |
30 |
tggttggaggatctgattggtttggttctggaagcagagttattattacaactagggacaaacatttg |
97 |
Q |
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| T |
29523053 |
tggttggaggaactgattggtttggttctggtagcagagttattgttacaacttgcgacaaacatttg |
29523120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 17802100 - 17802150
Alignment:
| Q |
47 |
tggtttggttctggaagcagagttattattacaactagggacaaacatttg |
97 |
Q |
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| T |
17802100 |
tggtttggttcaggaagcagagttattatcacaacaagggacaagcatttg |
17802150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 17791151 - 17791204
Alignment:
| Q |
47 |
tggtttggttctggaagcagagttattattacaactagggacaaacatttgttg |
100 |
Q |
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||||||||||| || |||||||||||||| ||||| ||||| || ||||||||| |
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| T |
17791151 |
tggtttggttcgggcagcagagttattataacaacaagggataagcatttgttg |
17791204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 18723241 - 18723192
Alignment:
| Q |
29 |
ttggttggaggatctgattggtttggttctggaagcagagttattattac |
78 |
Q |
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|||| ||||||| |||||||||| || ||||||||||||||||| ||||| |
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| T |
18723241 |
ttggctggaggacctgattggttcggctctggaagcagagttatcattac |
18723192 |
T |
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