View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_high_3 (Length: 639)
Name: NF2209_high_3
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 1033819 - 1034206
Alignment:
| Q |
18 |
aaattgagcctataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaagaactaattttagatacagactgaatttcacatca |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1033819 |
aaattgaacctataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaacaactaattttagatacagactgaatttcacatca |
1033918 |
T |
|
| Q |
118 |
atgttgaccttgctgagcttggggtgtctattattgatcatataccagaagaaattttgtgcctgtctgttcagaatcttgttctggcat-----atttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
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| T |
1033919 |
atgttgaccttgctgagcttggggtgtctattattgatcatataccagaagaaattttgtgcctgtctgttcagaatcttg-tatggcatatttaatttg |
1034017 |
T |
|
| Q |
213 |
actggtttaggact----cggaatcaccaagtaagatttgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatat |
308 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034018 |
actggtttgggactcggccggaatcattaagtaagatttgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatat |
1034117 |
T |
|
| Q |
309 |
gttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaa |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034118 |
gttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaa |
1034206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 50832255 - 50831828
Alignment:
| Q |
18 |
aaattgagcctataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaagaactaattttagatacagact--gaatttcacat |
115 |
Q |
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||||||| ||||| |||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||| | ||||||||||| || |||||||| |
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| T |
50832255 |
aaattgaacctattagagttctgagcagaagacattcattatcagtaaatgactctcaaaagcaacaactaatgtcagatacagactttgagtttcacat |
50832156 |
T |
|
| Q |
116 |
caatgttgaccttgctgagcttggggtgtctattattgatcatataccagaagaaattttgtgcctgtctgttcagaatcttgttctggcatatttgact |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
50832155 |
caatgttgatcttgctgagcttggggtgtctattattgaccatacaccggaagaaattttgtacctgtctattcagaatcttgttctggcatattcgact |
50832056 |
T |
|
| Q |
216 |
ggtttaggactcggaatcaccaagtaagatttgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatatgttttca |
315 |
Q |
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||||| || |||||||| | || ||||||||||||| |||||| |||||||||||||||||||| ||||||| || ||||| |||||||| |||||| |
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| T |
50832055 |
ggtttgggctccggaatcagtaggtgagatttgcatttagtcaacatatgcatctttgaattcgtttgcaacatgaaaaatggacatttatatattttca |
50831956 |
T |
|
| Q |
316 |
gttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaaaatgaccatataagacat |
415 |
Q |
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|||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| || ||| ||||||| |
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| T |
50831955 |
gttacattttctcaagtttcctggtgaaaatacagttcatacctaatatcttgttgactggtacaactcagccaagatttaaaataactatacaagacat |
50831856 |
T |
|
| Q |
416 |
ttttgtctggttatcccgttatttacaa |
443 |
Q |
| |
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|||||||||||| |||| |||| ||||| |
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| T |
50831855 |
ttttgtctggttgtcccattatgtacaa |
50831828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 179 - 410
Target Start/End: Original strand, 4515652 - 4515883
Alignment:
| Q |
179 |
cctgtctgttcagaatcttgttctggcatatttgactggtttaggactcggaatcaccaagtaagatttgcatttactcaa-cagatgcatctttgaatt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
4515652 |
cctgtctgttcagaatcttgttctggcatatttgactggtttgggattcggaatcactaggtaagatttgcatttactcaaacagatgcatctt-gaatt |
4515750 |
T |
|
| Q |
278 |
cgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| || |
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| T |
4515751 |
cgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttcccggtgaaaataaagttcaaacctaatgtcttgttgactggg |
4515850 |
T |
|
| Q |
378 |
acaactcagccaatatttaaaatgaccatataa |
410 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4515851 |
acaactcagccaatatttaaaatgaccatataa |
4515883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 4516329 - 4516411
Alignment:
| Q |
29 |
ataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaagaactaattttagatacagactgaatttc |
111 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
4516329 |
ataagagttctgagcagaagacattcatcatcagcgaatgactctcaaaagcaacaactaattttagatacagactgagtttc |
4516411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 584
Target Start/End: Complemental strand, 50831228 - 50831176
Alignment:
| Q |
532 |
gaagctcagtgggctttatgaatatcaaactactgccgcatcagttgatccaa |
584 |
Q |
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||||||| || |||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
50831228 |
gaagctcggtaggctttctgaatctcaaactactgccgcatcagttgatccaa |
50831176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 534
Target Start/End: Complemental strand, 50831554 - 50831502
Alignment:
| Q |
482 |
taccattgactctaacgccagttctactcaggtctcagagagttgtgtcagaa |
534 |
Q |
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||||||| |||| ||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
50831554 |
taccattaactccaacaccagttctattcaggcctcagagagttgtgtcagaa |
50831502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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