View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_high_5 (Length: 463)
Name: NF2209_high_5
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 50244932 - 50244491
Alignment:
| Q |
13 |
atcaaaatgaacgagcaatgatattatgttgctaagtgttttgggagctacagaggaatgaaagaatgtatgactaagcaaactattgttataaaacaaa |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244932 |
atcaaaatgaacgagcaatgatattatgttgttaagtgttttgggagctacagaggaatgaaagaatgtatgactaagcaaactattgttataaaacaaa |
50244833 |
T |
|
| Q |
113 |
tcataaaattgataatggggaacatataaatttacaattaaccacatgttcatgcatggacaaatgctttcccccttacaa-cggttatcaagcatnnnn |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50244832 |
tcataaaattgataatggggaacatataaatttacaattaaccacatgttcatgcatggacaaatgctttcccccttacaaacggttatcaagcataaaa |
50244733 |
T |
|
| Q |
212 |
nnnnnnnnttactgagaagcttaaatgtaacacaaatcacaaaagagaagttattcttatagtacctgtatttctgaaagtatgcatccatgcattgcca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244732 |
aacaaaaattactgagaagcttaaatgtaacacaaatcacaaaagagaagttattcttatagtacctgtatttctgaaagtatgcatccatgcattgcca |
50244633 |
T |
|
| Q |
312 |
tgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggataattgaacatcttgtatggaccatgaggtggctcccacaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244632 |
tgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggataattgaacatcttgtatggaccatgaggtggctcccacaa |
50244533 |
T |
|
| Q |
412 |
tgcaaaatctaactgtgcaacggtccaaataagtaagaataa |
453 |
Q |
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| T |
50244532 |
tgcaaaatctaactgtgcaacggtccaaataagtaagaataa |
50244491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 272 - 408
Target Start/End: Complemental strand, 31808500 - 31808364
Alignment:
| Q |
272 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggat |
371 |
Q |
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|||||||||||||| |||||||| ||||||||||| ||||| ||||| | ||||||||||| | ||||||||| | ||| ||||| || |||| |||| |
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| T |
31808500 |
agtacctgtatttcagaaagtatacatccatgcatagccatcaccataaatgcacaatgcctgagtgctccacttactttaacataatttttccatggat |
31808401 |
T |
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| Q |
372 |
aattgaacatcttgtatggaccatgaggtggctccca |
408 |
Q |
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| T |
31808400 |
atctaaacattttgtaacgaccatgaggtggctccca |
31808364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 408
Target Start/End: Original strand, 43822361 - 43822497
Alignment:
| Q |
272 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccatgagagcacaatgcctcaatgctccactaagtttgacatagcttctccaaggat |
371 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||| || | || ||||| | ||||||||| | |||| |||| |
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| T |
43822361 |
agtacctgaatttcagaaagtatgcatccatgcatggccatgaccatgaatgcacaatgtcttagagccccacttactttgacataattcttccatggat |
43822460 |
T |
|
| Q |
372 |
aattgaacatcttgtatggaccatgaggtggctccca |
408 |
Q |
| |
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| || | ||| |||||| |||||||||||| ||||| |
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| T |
43822461 |
agttaagcattttgtatttaccatgaggtggttccca |
43822497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 43815161 - 43815207
Alignment:
| Q |
272 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccat |
318 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
43815161 |
agtacctgtatttcagaaagtatgcatccatgcatggccatgaccat |
43815207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 43829943 - 43829988
Alignment:
| Q |
272 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgacca |
317 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
43829943 |
agtacctgaatttcagaaagtatgcatccatgcatggccataacca |
43829988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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