View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_high_6 (Length: 438)
Name: NF2209_high_6
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 16649866 - 16649516
Alignment:
| Q |
18 |
actcatgataagagctagtagatttcacctcacaacattccttcaaattttgcagtgtgatatatggaacaacttacggtgtgacaaaattatgttttag |
117 |
Q |
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| T |
16649866 |
actcatgataagagttagtagatttcacctcacaacattccttcaaattttgcagtgtgatatacggaacaacttacggtgtgacaaaattatgttttag |
16649767 |
T |
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| Q |
118 |
acaaaatataaatagttttacacttttttaggattttaaaatcaaacgagtaagagaaaaatatgataatcacttgaaaatttatgaaatgagaattgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16649766 |
acaaaatataaatagttttacacttttttaggattttaaaatcaaacgagtaagagaaaaatatgataatcacttgaaaatttatgaaatgagaatcgaa |
16649667 |
T |
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| Q |
218 |
cattgggaaagagagtttgatatttctttcannnnnnnnnatcaattcttatgaatagctaaacccttttggctaagattaagatgaacatcttttgata |
317 |
Q |
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| T |
16649666 |
tattgggaaagagagtttgatatttctttca--tttttttatcaattcttatgaatagctaaacccttttggctaagattaagatgaacatctttttata |
16649569 |
T |
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| Q |
318 |
tatttttaattaaattctcatattattcatgtcattgaaactgtaacaccttg |
370 |
Q |
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| T |
16649568 |
tatttttaattaaattctcatattattcatgtcattgaaactgtaacaccttg |
16649516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 24757555 - 24757337
Alignment:
| Q |
29 |
gagctagtagatttcacctcacaacattccttcaaattttgcagtgtgatatatggaacaacttacggtgtgacaaaattatgttttagacaaaatataa |
128 |
Q |
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| T |
24757555 |
gagctagtagatttcaccacacaacattccatcaaattttgcagtgcgatataaggaacaacttgcggtgcaacaaatttctgttctagacaacatttaa |
24757456 |
T |
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| Q |
129 |
atagttttacactttt-ttaggattttaaaatcaaacgagtaagagaaaaatatgataatcacttgaaaatttatgaaatgagaattgaacattgggaaa |
227 |
Q |
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| T |
24757455 |
gtagttttacacttttgttagggttttaaaatcaaatgagttagagaaaaatagcataaacacatgaaaaaatatgaaatgagaattaaacatt-ggaaa |
24757357 |
T |
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| Q |
228 |
gagagtttgatatttctttc |
247 |
Q |
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||||||| ||||||||||| |
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| T |
24757356 |
aagagtttaatatttctttc |
24757337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 14909585 - 14909380
Alignment:
| Q |
29 |
gagctagtagatttcacctcacaacattccttcaaattttgcagtgtgatatatggaacaacttacggtgtgacaaaattatgttttagacaaaatataa |
128 |
Q |
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|||||||||||||| | ||||||| |||| |||||||||| |||||||||||| ||||||||| |||| || || || |||||||||| | | ||| |
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| T |
14909585 |
gagctagtagatttgagctcacaatattcaatcaaattttgtagtgtgatatattgaacaacttgcggtacgatgaatttctgttttagacca--tttaa |
14909488 |
T |
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| Q |
129 |
atagttttacact-tttttaggattttaaaatcaaacgagtaagagaaaaatatgataatcacttgaaaatttatgaaatgagaattgaacattgggaaa |
227 |
Q |
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|||| ||||||| |||||||| ||||||||||||| ||| | ||||||||| ||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
14909487 |
gtagtattacactatttttagggttttaaaatcaaattagttacagaaaaatagcatatacacttgaaaaaccatgaaatgagaattaaacattgggaaa |
14909388 |
T |
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| Q |
228 |
gagagttt |
235 |
Q |
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|||||||| |
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| T |
14909387 |
gagagttt |
14909380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 24757293 - 24757197
Alignment:
| Q |
259 |
tcaattcttatgaatagctaaacccttttggctaagattaagatgaacatcttttgatatatttttaattaaattctcatattattcatgtcattga |
355 |
Q |
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| T |
24757293 |
tcaattcctatgatgatctaaacccttttggctaaggttaaaatgaaaatattttgatatatttttaattaaattctcttattatttatgccattga |
24757197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 24770011 - 24769872
Alignment:
| Q |
75 |
tgatatatggaacaacttacggtgtgacaaaattatgttttagacaaaatataaatagttttacactt-ttttaggattttaaaatcaaacgagtaagag |
173 |
Q |
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|||||||||||||| ||| ||||| |||| |||||||||||||| |||||| || |||||||||| ||||||| |||||| |||||| |||| |||| |
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| T |
24770011 |
tgatatatggaacagcttgcggtgcatcaaatttatgttttagacagtatataa-taattttacacttattttagggttttaacatcaaatgagttagag |
24769913 |
T |
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| Q |
174 |
aaaaatatgataatcacttgaaaatttatgaaatgagaatt |
214 |
Q |
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||||||| ||| |||||||||| ||||||||||||||| |
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| T |
24769912 |
aaaaatagcctaaacacttgaaaaactatgaaatgagaatt |
24769872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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