View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2209_low_1 (Length: 701)

Name: NF2209_low_1
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2209_low_1
NF2209_low_1
[»] chr1 (15 HSPs)
chr1 (219-682)||(19456452-19456914)
chr1 (9-148)||(17242012-17242156)
chr1 (9-87)||(9010966-9011044)
chr1 (11-87)||(24302999-24303075)
chr1 (48-148)||(9008762-9008865)
chr1 (100-148)||(9011063-9011110)
chr1 (48-87)||(17240784-17240823)
chr1 (9-63)||(13970040-13970094)
chr1 (99-148)||(24304310-24304358)
chr1 (116-148)||(48030257-48030289)
chr1 (116-146)||(43402266-43402296)
chr1 (100-148)||(17240718-17240767)
chr1 (116-148)||(24302937-24302969)
chr1 (29-61)||(48030165-48030197)
chr1 (100-148)||(51676340-51676388)
[»] chr7 (8 HSPs)
chr7 (9-148)||(5737178-5737322)
chr7 (419-477)||(10197896-10197954)
chr7 (48-148)||(5769254-5769359)
chr7 (636-682)||(10197685-10197732)
chr7 (100-148)||(23525582-23525631)
chr7 (9-87)||(12629337-12629416)
chr7 (102-148)||(6591270-6591316)
chr7 (504-549)||(10197852-10197898)
[»] chr8 (9 HSPs)
chr8 (11-82)||(40463515-40463586)
chr8 (9-87)||(9310831-9310909)
chr8 (100-148)||(38973754-38973802)
chr8 (100-148)||(39004852-39004900)
chr8 (116-148)||(14099746-14099778)
chr8 (100-148)||(42480899-42480947)
chr8 (117-148)||(3917797-3917828)
chr8 (9-63)||(38973842-38973897)
chr8 (9-63)||(39004940-39004995)
[»] scaffold0262 (1 HSPs)
scaffold0262 (11-82)||(4293-4364)
[»] chr3 (8 HSPs)
chr3 (11-82)||(11150344-11150415)
chr3 (100-152)||(42277228-42277280)
chr3 (27-87)||(51832437-51832497)
chr3 (9-62)||(52043333-52043386)
chr3 (9-63)||(39605670-39605725)
chr3 (100-150)||(39605582-39605631)
chr3 (9-63)||(54672720-54672774)
chr3 (100-148)||(15438471-15438520)
[»] chr4 (7 HSPs)
chr4 (11-87)||(47862000-47862076)
chr4 (100-150)||(56083353-56083403)
chr4 (48-87)||(44355359-44355398)
chr4 (9-63)||(47378639-47378693)
chr4 (116-146)||(47861936-47861966)
chr4 (9-62)||(52706704-52706757)
chr4 (116-148)||(12861413-12861445)
[»] scaffold0268 (3 HSPs)
scaffold0268 (419-477)||(22135-22193)
scaffold0268 (636-682)||(22356-22403)
scaffold0268 (504-549)||(22191-22237)
[»] scaffold0049 (1 HSPs)
scaffold0049 (116-148)||(3943-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (117-148)||(11537-11568)
[»] chr6 (4 HSPs)
chr6 (117-148)||(12603938-12603969)
chr6 (117-148)||(25483421-25483452)
chr6 (100-148)||(6624254-6624301)
chr6 (119-147)||(26545892-26545920)
[»] chr5 (3 HSPs)
chr5 (117-148)||(29875948-29875979)
chr5 (100-148)||(12316349-12316397)
chr5 (116-148)||(27491295-27491327)
[»] chr2 (1 HSPs)
chr2 (101-148)||(29042337-29042384)
[»] scaffold0071 (1 HSPs)
scaffold0071 (100-148)||(23671-23720)
[»] scaffold0197 (1 HSPs)
scaffold0197 (116-148)||(28784-28816)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 219 - 682
Target Start/End: Original strand, 19456452 - 19456914
Alignment:
Q  219 acactcattccaatttcaaaagtcaattaaacactaccacgtcacaaattttaccaccgatcaaaaaacccaaaattttcaaacttattccaaaaatccc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||    
T  19456452 acactcattccaatttcaaaagtcaattaaacactaccacgtcacaaattttaccaccgatcaaaaaaccccaaattttcaaactaat-ccaaaaatccc 19456550  T
Q  319 aacgcaccatttcatccttatccctgatttttccctcctcaaaaccccaaaataccgttttccccacatttttctctccccaaactaccctccaccagat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456551 aacgcaccatttcatccttatccctgatttttccctcctcaaaaccccaaaataccgttttccccacatttttctctccccaaactaccctccaccagat 19456650  T
Q  419 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaatttccttcttctcccgcacactttttcaaatccaaaa-cac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |    
T  19456651 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccgcgtagtttccaatttccttcttctcccgcacgcttttccaaatccaaaacccc 19456750  T
Q  518 cccaaaattttcaaattcacccgctcctatttccactcagaaatcattatttaaacccttcaccccttcattcttactcacaacacttcaacctatcaga 617  Q
    |||||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  19456751 cccaaaatttacaaattctcccgctcctatttccactaaaaaatcattatttaaacccttcacctcttcattcttactcacaacacttcaacctatcaaa 19456850  T
Q  618 ataatcacnnnnnnnctttcaatttcaatttcccaaaccaaacatgcctgcttttccagaagaac 682  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456851 ataatcac-ttttttctttcaatttcaatttcccaaaccaaacatgcctgcttttccagaagaac 19456914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 17242012 - 17242156
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggta 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   |||||    
T  17242012 acatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggta 17242111  T
Q  105 taccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 148  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  17242112 taccaaaaagcccccaaatggcaggggggtaaaagcctattaacc 17242156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 9010966 - 9011044
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9010966 acatcatcacattaatccagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaaggggaaatctacaag 9011044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 24303075 - 24302999
Alignment:
Q  11 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    ||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  24303075 atcatcacattaatccattcagatggcttgagggtgtaaatcaaagaatcttctaattgcaagggggaatctccaag 24302999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 9008865 - 9008762
Alignment:
Q  48 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg--tataccaaaaagtccccaaatggcagggggtaaaagcctatt 144  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  9008865 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacagggggtataccaaaagacccccaaatggcagggggtaaaagcctatt 9008766  T
Q  145 aacc 148  Q
    ||||    
T  9008765 aacc 9008762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 9011063 - 9011110
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9011063 gggtataccaaaaag-ccccaaatggcagggggtaaaaacctattaacc 9011110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 17240823 - 17240784
Alignment:
Q  48 aaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  17240823 aaaccaaagaatcttctaatggcaagggggaatctacaag 17240784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 13970094 - 13970040
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 63  Q
    |||||||| |||||||| ||||| |||| |||||||| |||||||||||||||||    
T  13970094 acatcatctcattaatccagtcatatggtttgggggtataaaccaaagaatcttc 13970040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 24304310 - 24304358
Alignment:
Q  99 agggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  24304310 agggtaaaccaaaaa-tccccaaatggcagggggtaaaaacctattaacc 24304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 48030257 - 48030289
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||||||||||||||||||||||||    
T  48030257 ccccaaatggcagggggtaaaagcctattaacc 48030289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 43402296 - 43402266
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaa 146  Q
    |||||||||||||||||||||||||||||||    
T  43402296 ccccaaatggcagggggtaaaagcctattaa 43402266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 17240767 - 17240718
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 148  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||    
T  17240767 gggtataccaaaagacccccaaatggcaggggggtaaaagcctattaacc 17240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 24302969 - 24302937
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||||||||||||| ||||||||||    
T  24302969 ccccaaatggcagggggtaaaatcctattaacc 24302937  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 48030165 - 48030197
Alignment:
Q  29 tcagatggcttgggggtgtaaaccaaagaatct 61  Q
    ||||||||| |||||||||||||||||||||||    
T  48030165 tcagatggcctgggggtgtaaaccaaagaatct 48030197  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 51676340 - 51676388
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||||   |||||||| |||||||||||||| |||||||||    
T  51676340 gggtataccaaaagacccccaaatagcagggggtaaaagtctattaacc 51676388  T

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Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 5737322 - 5737178
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggta 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   |||||    
T  5737322 acatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggta 5737223  T
Q  105 taccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 148  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  5737222 taccaaaaagcccccaaatggcaggggggtaaaagcctattaacc 5737178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 10197954 - 10197896
Alignment:
Q  419 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaa 477  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  10197954 aaatcttctcatcaaagcttccccaatttcctttcaaaattcacccgcgtactttccaa 10197896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 5769254 - 5769359
Alignment:
Q  48 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg---tataccaaaaagtccccaaatggca-gggggtaaaagccta 142  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||   ||||||||||   |||||||||||| |||||||||||||||    
T  5769254 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaagacccccaaatggcaggggggtaaaagccta 5769353  T
Q  143 ttaacc 148  Q
    ||||||    
T  5769354 ttaacc 5769359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 682
Target Start/End: Complemental strand, 10197732 - 10197685
Alignment:
Q  636 tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaac 682  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10197732 tcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaac 10197685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 23525631 - 23525582
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcag-ggggtaaaagcctattaacc 148  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  23525631 gggtataccaaaaatcccccaaatggcagcggggtaaaagcctattaacc 23525582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 12629337 - 12629416
Alignment:
Q  9 acatcatcacattaatctagtcagatggct-tgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    |||||||| |||| ||| |||||||||||  | |||| ||||||||||||||||  |||||| |||||||||||| ||||    
T  12629337 acatcatcccatttatccagtcagatggcgctaggggggtaaaccaaagaatctaataatggcaagggggaatcttcaag 12629416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 6591316 - 6591270
Alignment:
Q  102 gtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||   | |||||||||||||||||||||||||||||||    
T  6591316 gtataccaaaataccaccaaatggcagggggtaaaagcctattaacc 6591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 549
Target Start/End: Complemental strand, 10197898 - 10197852
Alignment:
Q  504 caaatccaaaacaccccaaaat-tttcaaattcacccgctcctattt 549  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  10197898 caaatccaaaaccccccaaaaaatttcaaattcacccgctcctattt 10197852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40463515 - 40463586
Alignment:
Q  11 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 82  Q
    ||||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40463515 atcatcatattaatccaatcagatggcttgggggtgtaaatcaaagaatcttctaatggtaagggggaatct 40463586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 9310831 - 9310909
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    |||||||| |||||||| | ||| || |||||||||||| ||||| |||||||||| |||| |||||||||||| ||||    
T  9310831 acatcatctcattaatccattcatatagcttgggggtgtgaaccagagaatcttctcatggcaagggggaatctccaag 9310909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 38973802 - 38973754
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  38973802 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 38973754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 39004900 - 39004852
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  39004900 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 39004852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 14099778 - 14099746
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||||||||||||||||||||||||    
T  14099778 ccccaaatggcagggggtaaaagcctattaacc 14099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 42480947 - 42480899
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  42480947 gggtaaaccaaaaaacccctaaatggcagggggtaaaagcctattaacc 42480899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 3917828 - 3917797
Alignment:
Q  117 cccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  3917828 cccaaatggcagggggtaaaagcctattaacc 3917797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 38973897 - 38973842
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 63  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  38973897 acatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 38973842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 39004995 - 39004940
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 63  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  39004995 acatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 39004940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4293 - 4364
Alignment:
Q  11 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 82  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4293 atcatcatattaatccaatcagatggcttgggggtgtaaaccaaataatcttctaatggcaagagggaatct 4364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 11150415 - 11150344
Alignment:
Q  11 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 82  Q
    ||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||    
T  11150415 atcatcacattaatccaatcagatgacttgggggtgtaaaccaaggaatcttctaatggcaaggggggatct 11150344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 42277280 - 42277228
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccataa 152  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  42277280 gggtataccaaaaaaaacccaaatggcagggggtaaaagcctattaaccataa 42277228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 51832437 - 51832497
Alignment:
Q  27 agtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||  ||||| |||||||||||    
T  51832437 agtcatatggcttgggggtgttaactaaagaatcttctaatgacaagggagaatctacaag 51832497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 52043333 - 52043386
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 62  Q
    |||||||| |||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  52043333 acatcatctcattgatccagtcagatgacttgggggtgtaaaccaaataatctt 52043386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 39605725 - 39605670
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 63  Q
    |||||||| |||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  39605725 acatcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatcttc 39605670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 39605631 - 39605582
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 150  Q
    ||||| ||||||||  |||||||||||||||| ||||||||||||||||||    
T  39605631 gggtacaccaaaaaacccccaaatggcagggg-taaaagcctattaaccat 39605582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 54672774 - 54672720
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 63  Q
    |||||||| |||||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  54672774 acatcatcccattaatccagtcatatggtttgagggtgtaaatcaaagaatcttc 54672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 15438520 - 15438471
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 148  Q
    ||||||||||||||  || |||||||||||||| ||||||||||||||||    
T  15438520 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 15438471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 47862076 - 47862000
Alignment:
Q  11 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    |||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  47862076 atcaccacattaatccaatcagatggtttggaggtgtaaaccaaagaatcttctaatggcaaggggggatctccaag 47862000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 56083403 - 56083353
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 150  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||    
T  56083403 gggtataccaaaagacccccaaatggcagggggtaaaagcctattaaccat 56083353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 44355359 - 44355398
Alignment:
Q  48 aaaccaaagaatcttctaatggtaagggggaatctacaag 87  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  44355359 aaaccaaagaatcttctaatagcaagggggaatctacaag 44355398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 47378639 - 47378693
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 63  Q
    |||||||| |||||||| ||||| || |||||||||| | |||||||||||||||    
T  47378639 acatcatctcattaatccagtcatatagcttgggggtatgaaccaaagaatcttc 47378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 47861966 - 47861936
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaa 146  Q
    |||||||||||||||||||||||||||||||    
T  47861966 ccccaaatggcagggggtaaaagcctattaa 47861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 52706704 - 52706757
Alignment:
Q  9 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 62  Q
    |||||||  |||| ||| ||||||||||||||| ||||||||||||| ||||||    
T  52706704 acatcatttcattgatccagtcagatggcttggaggtgtaaaccaaataatctt 52706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 12861445 - 12861413
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||| ||||||||||||||||||||||||    
T  12861445 ccccaaatagcagggggtaaaagcctattaacc 12861413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Original strand, 22135 - 22193
Alignment:
Q  419 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaa 477  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  22135 aaatcttctcatcaaagcttccccaatttcctttcaaaattcacccgcgtactttccaa 22193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 682
Target Start/End: Original strand, 22356 - 22403
Alignment:
Q  636 tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaac 682  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  22356 tcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaac 22403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 22191 - 22237
Alignment:
Q  504 caaatccaaaacaccccaaaat-tttcaaattcacccgctcctattt 549  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  22191 caaatccaaaaccccccaaaaaatttcaaattcacccgctcctattt 22237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 3943 - 3975
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||||||||||||||||||||||||    
T  3943 ccccaaatggcagggggtaaaagcctattaacc 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 11568 - 11537
Alignment:
Q  117 cccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  11568 cccaaatggcagggggtaaaagcctattaacc 11537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 12603969 - 12603938
Alignment:
Q  117 cccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  12603969 cccaaatggcagggggtaaaagcctattaacc 12603938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Original strand, 25483421 - 25483452
Alignment:
Q  117 cccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  25483421 cccaaatggcagggggtaaaagcctattaacc 25483452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 6624301 - 6624254
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  6624301 gggtataccaaaa-gaccccaaatggcaaggggtaaaaacctattaacc 6624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 26545892 - 26545920
Alignment:
Q  119 caaatggcagggggtaaaagcctattaac 147  Q
    |||||||||||||||||||||||||||||    
T  26545892 caaatggcagggggtaaaagcctattaac 26545920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 29875979 - 29875948
Alignment:
Q  117 cccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  29875979 cccaaatggcagggggtaaaagcctattaacc 29875948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 12316397 - 12316349
Alignment:
Q  100 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||||||||   | ||||||||||||| |||||||||||||||||    
T  12316397 gggtataccaaaagacctccaaatggcagggagtaaaagcctattaacc 12316349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 27491295 - 27491327
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    |||||||| ||||||||||||||||||||||||    
T  27491295 ccccaaattgcagggggtaaaagcctattaacc 27491327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 29042384 - 29042337
Alignment:
Q  101 ggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||    
T  29042384 ggtataccaaaagacccccaaatagcagggggtaaaagcctattaacc 29042337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 23671 - 23720
Alignment:
Q  100 gggtataccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 148  Q
    ||||||||||||||  || ||||||||| |||||||||||||||||||||    
T  23671 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 23720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 28816 - 28784
Alignment:
Q  116 ccccaaatggcagggggtaaaagcctattaacc 148  Q
    ||||||||||||||||||||||||| |||||||    
T  28816 ccccaaatggcagggggtaaaagccaattaacc 28784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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