View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_low_11 (Length: 410)
Name: NF2209_low_11
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 31097801 - 31097392
Alignment:
| Q |
1 |
attgagaatgcgagacggattggttggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctt |
100 |
Q |
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| T |
31097801 |
attgagaatgcgagacggattggtcggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctt |
31097702 |
T |
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| Q |
101 |
tacaaagtaaatccacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatatt |
200 |
Q |
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| T |
31097701 |
tacaaagtaaatccacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatatt |
31097602 |
T |
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| Q |
201 |
tttatcaagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatcccttt |
300 |
Q |
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| T |
31097601 |
tttatcaagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagttttttttacttattctcaatctttatcccttt |
31097502 |
T |
|
| Q |
301 |
agagttctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactgatgatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
31097501 |
agagttctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgagg |
31097402 |
T |
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| Q |
401 |
tccatctcat |
410 |
Q |
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| T |
31097401 |
tccacctcat |
31097392 |
T |
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