View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2209_low_12 (Length: 410)
Name: NF2209_low_12
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_12 |
 | |
|
| [»] chr6 (13 HSPs) |
| |
|
| [»] scaffold0087 (8 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 5883590 - 5883999
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaagaacaagctttcactatatcacatcatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5883590 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaagaaaaagctttcactatgtcacatcatcagttt |
5883689 |
T |
|
| Q |
101 |
cctatacggagagcatagtgcatgaaatcggcttcttcagcgacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5883690 |
cctatacggagagcatagtgcatgaaatcggcttcttcagcgacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggatt |
5883789 |
T |
|
| Q |
201 |
gataacaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5883790 |
gataacaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaat |
5883889 |
T |
|
| Q |
301 |
aatctcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagct |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5883890 |
aatctcacaggaatgattcccaacaacattggtcatatgaaaatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagct |
5883989 |
T |
|
| Q |
401 |
tttcaaattt |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
5883990 |
tttcaaattt |
5883999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 157 - 410
Target Start/End: Complemental strand, 5889463 - 5889210
Alignment:
| Q |
157 |
gcattgaaaggatcaaatagagaatatggaaaaaatcttggattgataacaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagta |
256 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||| | ||||| ||||||| |
|
|
| T |
5889463 |
gcattaaaaggatcaaacagagaatatggaaaaaatcttggattgatggcaactattgatctttcaagcaaccacttaaccggagtaatacctcaaagta |
5889364 |
T |
|
| Q |
257 |
taacaaaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcact |
356 |
Q |
| |
|
||||||||||||| | |||||||| ||| ||||||||||| ||| ||||||||||| | ||||||| ||||||||||||||| | ||||| |||||||| |
|
|
| T |
5889363 |
taacaaaacttgtggtattagttgatttgaacctttcaggaaatcatctcacaggattaattcccaaaaacattggtcatatggaaatgttggaatcact |
5889264 |
T |
|
| Q |
357 |
tgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaattt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5889263 |
cgacttgtcaagaaaccatctttcgggtaaaatgccaacaagcttttcaaattt |
5889210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 5821156 - 5821561
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaagaacaagctttcactatatcacatcatcagttt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||||| |||||||||| ||||||| | |||||||| ||| || ||||||||| ||| | || |
|
|
| T |
5821156 |
aatattacagggaaaataccacaatgcttaggtgacataattgctttatctaatttgaactctccaagaaaaagtttccactatatctcatacggatttg |
5821255 |
T |
|
| Q |
101 |
cctatacggagagcatagtgcatgaaatcggcttcttcagcgacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggatt |
200 |
Q |
| |
|
||||| ||| ||| |||| |||| | |||| ||||| ||||| | || ||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5821256 |
gctatatggatggcaaagtgtatgacgttggctccttcaatgacaaagaaatattggcattgaaaggatcaaacagagaatatggaaaaaatcttggatt |
5821355 |
T |
|
| Q |
201 |
gataacaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaat |
300 |
Q |
| |
|
||| |||| || |||||||| ||||||| ||||| ||||||||||| |||||||||||||| | || | |||||||||||||||||||||| ||||| |
|
|
| T |
5821356 |
gatggcaactatcgatctttcaagcaaccacttaacaggtgagataccgcaaagtataacaaagttggtggtattagttggtttaaacctttcaaggaat |
5821455 |
T |
|
| Q |
301 |
aatctcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagct |
400 |
Q |
| |
|
|||||||||||| | ||||| | |||||||||||||||| | | ||||||||| | |||||||||||||| ||||| | |||| |||||||||||||| |
|
|
| T |
5821456 |
aatctcacaggattcattcctagcaacattggtcatatggaaagtttagaatcattggacttgtcaagaaatcatctctacggtaaaatgccaacaagct |
5821555 |
T |
|
| Q |
401 |
tttcaa |
406 |
Q |
| |
|
|||||| |
|
|
| T |
5821556 |
tttcaa |
5821561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 142 - 410
Target Start/End: Original strand, 5853570 - 5853838
Alignment:
| Q |
142 |
gacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggattgataacaacaattgatctttcttgcaaccaattaaccggtg |
241 |
Q |
| |
|
||||||| || ||| |||| |||||||||||| |||||||||||||||| ||||| |||| | | || |||||||||||||||||||||||||| | |
|
|
| T |
5853570 |
gacaaggaaatattggcatggaaaggatcaaacagagaatatggaaaaattcttgaattggcgatatttatcgatctttcttgcaaccaattaaccggag |
5853669 |
T |
|
| Q |
242 |
agataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaccaacattggtcatatgaa |
341 |
Q |
| |
|
||||||| ||||| ||||| ||||| | ||||||| | |||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
5853670 |
agatacctcaaagcataacgaaactcgcagcattagctagtttaaacctttcaaggaataatctcacaggattaattcccaataacattggtcatatgaa |
5853769 |
T |
|
| Q |
342 |
gatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaattt |
410 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5853770 |
aatgttagaatcgctcgatttgtcaagaaaccatctttctggtagaatgccaacaagcttttcaaattt |
5853838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 142 - 410
Target Start/End: Original strand, 5830629 - 5830897
Alignment:
| Q |
142 |
gacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggattgataacaacaattgatctttcttgcaaccaattaaccggtg |
241 |
Q |
| |
|
||||||| || ||| |||| |||||||||||| | ||||||| |||| |||||||||| | || | ||||||||||| |||||||| ||||| || | |
|
|
| T |
5830629 |
gacaaggaaatattggcatggaaaggatcaaacattgaatatgataaaattcttggattggtgactatcattgatctttcgtgcaaccacttaacaggag |
5830728 |
T |
|
| Q |
242 |
agataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaccaacattggtcatatgaa |
341 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||| | |
|
|
| T |
5830729 |
agatacctcaaagtataacaaaactcgtggcattagctactttaaacctttcaaggaataatctcacaggaatcattcctagcaacattggtcatatgga |
5830828 |
T |
|
| Q |
342 |
gatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaattt |
410 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
5830829 |
aaggttagaatcactcgacttgtcaagaaaccatctttctggtagaatgccaacgagcttttcaaattt |
5830897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 159 - 406
Target Start/End: Original strand, 5881032 - 5881279
Alignment:
| Q |
159 |
attgaaaggatcaaatagagaatatggaaaaaatcttggattgataacaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtata |
258 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||| | |||| || || |||||||| |||| |
|
|
| T |
5881032 |
attgaaaggatcaaatagagaatatggtaaaaatctcggattggtgacaacaattgatctttcttgcaacaacctaacaggagaaataccccacgatata |
5881131 |
T |
|
| Q |
259 |
acaaaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttg |
358 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||| ||| ||||||||||| | ||||||| ||||||||||||||||| |||||||||||| | | |
|
|
| T |
5881132 |
ccaaaactcgtggcattagttggtttagacctttcaggaaatcatctcacaggattaattcccaaaaacattggtcatatgaaaatgttagaatcattgg |
5881231 |
T |
|
| Q |
359 |
acttgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaa |
406 |
Q |
| |
|
||||||||||||| ||||| | |||| |||||||||||||||||||| |
|
|
| T |
5881232 |
acttgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaa |
5881279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 5761800 - 5762005
Alignment:
| Q |
205 |
acaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatc |
304 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||||| || ||||||| ||||| || ||||||| || ||||||||||||| ||||||||| |
|
|
| T |
5761800 |
acaaccattgatctttcttgcaaccatttaaccggagagataccagaaggtataactaaactcgtggcattagctgctttaaacctttcatggaataatc |
5761899 |
T |
|
| Q |
305 |
tcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttc |
404 |
Q |
| |
|
|||||||| | ||||| | |||||||||||||||||| | ||| ||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5761900 |
tcacaggatttattcctagcaacattggtcatatgaaaagtttacaatcactcgacttgtcaataaaccatctttcaggtagaatgccaacaagcttttc |
5761999 |
T |
|
| Q |
405 |
aaattt |
410 |
Q |
| |
|
|||||| |
|
|
| T |
5762000 |
aaattt |
5762005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 273 - 410
Target Start/End: Original strand, 5163566 - 5163703
Alignment:
| Q |
273 |
attagttggtttaaacctttcagggaataatctcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaac |
372 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| | ||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
5163566 |
attagttggtttaaaccttttagggaatattctcacaggattcattcccaacaacattggtcatatgaaaatgttggaatcactcgacttgtcaagaaac |
5163665 |
T |
|
| Q |
373 |
catctttcgggtagaatgccaacaagcttttcaaattt |
410 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
5163666 |
catctttcaggtaaaatgccaacaaacttttcaaattt |
5163703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 5761614 - 5761667
Alignment:
| Q |
16 |
ataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaaga |
69 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5761614 |
ataccagaatgcttcagtcacatagttgctttatcaaatttgaagtttccaaga |
5761667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5889619 - 5889529
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaagaacaagctttcactatatcacat |
91 |
Q |
| |
|
||||||| ||||||||||||| ||||||| || ||||| |||||||||| ||||||| | |||||||| ||| || ||||||||| ||| |
|
|
| T |
5889619 |
aatattataggggaaataccataatgcttaggtgacataattgctttatctaatttgaactctccaagaaaaagtttccactatatctcat |
5889529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 34130853 - 34130819
Alignment:
| Q |
16 |
ataccacaatgcttcagtaacatacttgctttatc |
50 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
34130853 |
ataccacaatgcttcagtaacacacttgctttatc |
34130819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 34136478 - 34136444
Alignment:
| Q |
16 |
ataccacaatgcttcagtaacatacttgctttatc |
50 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
34136478 |
ataccacaatgcttcagtaacacacttgctttatc |
34136444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5853426 - 5853495
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaagaa |
70 |
Q |
| |
|
||||| || |||||||||||||||||||| | | ||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
5853426 |
aatataaccggggaaataccacaatgctttgatcagatagttgctttaacaaatttgaagtttccaagaa |
5853495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 168; Significance: 6e-90; HSPs: 8)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 40604 - 41004
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaagaacaagctttcactatatcacatcatcagttt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||| || ||| | ||| || ||| |
|
|
| T |
40604 |
aatattacagggcaaataccacaatgcttcagtcacataattgctttatcaaatttgatgtttccaagaaaaagatttgaccatagctcatacacatttt |
40703 |
T |
|
| Q |
101 |
cctat-acggagagcatagtgcatgaaatcggcttcttcagcgacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggat |
199 |
Q |
| |
|
| | | || || | || ||||||| |||| ||||| |||||||||| ||| |||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
40704 |
caattgaaggtga----aatgtatgaaattggctccttcaaggacaaggcaatattggcatggaaaggatcaaacagagaatatgggaaaaatcttggat |
40799 |
T |
|
| Q |
200 |
tgataacaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaa |
299 |
Q |
| |
|
|||| || | |||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |||| |
|
|
| T |
40800 |
tgatgacgatcattgatctttctaacaaccacttaactggagagatacctaaaagtataacaaaacttgtggcattagctggtttaaacctttcaaggaa |
40899 |
T |
|
| Q |
300 |
taatctcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagc |
399 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
40900 |
taatctcacaggattaattcccaacaacattggtcatatggaaacattagaatcacttgacttgtcaagaaaccatctttctgggagaatgccaccaagc |
40999 |
T |
|
| Q |
400 |
ttttc |
404 |
Q |
| |
|
||||| |
|
|
| T |
41000 |
ttttc |
41004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 142 - 410
Target Start/End: Original strand, 34701 - 34969
Alignment:
| Q |
142 |
gacaaggcaaaatttgcattgaaaggatcaaatagagaatatggaaaaaatcttggattgataacaacaattgatctttcttgcaaccaattaaccggtg |
241 |
Q |
| |
|
||||||| || ||| |||| |||||||||||| || ||||||| |||| |||||||||| | || | ||||||||||| |||||||| ||||| || | |
|
|
| T |
34701 |
gacaaggaaatattggcatggaaaggatcaaacagtgaatatgataaaattcttggattggtgactatcattgatctttcgtgcaaccacttaacaggag |
34800 |
T |
|
| Q |
242 |
agataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaccaacattggtcatatgaa |
341 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||||||||| ||||| | ||| |||||||||||| | |
|
|
| T |
34801 |
agatacctcaaagtataacaaaactcgtggcattagctactttaaacctttcaaggaataatctcacaggaatcattcctagcaaaattggtcatatgga |
34900 |
T |
|
| Q |
342 |
gatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaattt |
410 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
34901 |
aaggttagaatcactcgacttgtcaagaaaccatctttctggtagaatgccaacgagcttttcaaattt |
34969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 20424 - 20629
Alignment:
| Q |
205 |
acaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatc |
304 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
20424 |
acaaccattgatctttcttgcaaccatttaacaggagagataccccaaagtataacaaaactcgtggcattagctggtttaaacctttcatggaataatc |
20523 |
T |
|
| Q |
305 |
tcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttc |
404 |
Q |
| |
|
|||||||| | ||||| | |||||||||||||||| | | |||||||||||||||||| |||||||| ||| |||| ||||||||||| || ||||| || |
|
|
| T |
20524 |
tcacaggattcattcctagcaacattggtcatatggaaaggttagaatcacttgacttctcaagaaatcatatttctggtagaatgccgacgagcttctc |
20623 |
T |
|
| Q |
405 |
aaattt |
410 |
Q |
| |
|
|||||| |
|
|
| T |
20624 |
aaattt |
20629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 30772 - 30977
Alignment:
| Q |
205 |
acaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatc |
304 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
30772 |
acaaccattgatctttcttgcaaccatttaacaggagagataccccaaagtataacaaaactcgtggcattagctggtttaaacctttcatggaataatc |
30871 |
T |
|
| Q |
305 |
tcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttc |
404 |
Q |
| |
|
|||||||| | ||||| | |||||||||||||||| | | ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||||| | |
|
|
| T |
30872 |
tcacaggattcattcctagcaacattggtcatatggaaagattagaatcactagacttatcaagaaaacatatttcaggtagaatgccaacgagcttaac |
30971 |
T |
|
| Q |
405 |
aaattt |
410 |
Q |
| |
|
|||||| |
|
|
| T |
30972 |
aaattt |
30977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 13366 - 13571
Alignment:
| Q |
205 |
acaacaattgatctttcttgcaaccaattaaccggtgagataccccaaagtataacaaaacttgttgcattagttggtttaaacctttcagggaataatc |
304 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || |||||||| || ||||||||||||| || ||||||| || ||| ||||||||| ||||||||| |
|
|
| T |
13366 |
acaaccattgatctttcttgcaaccatttaacaggagagataccagaaggtataacaaaactcgtggcattagctgctttcaacctttcatggaataatc |
13465 |
T |
|
| Q |
305 |
tcacaggaatgattcccaccaacattggtcatatgaagatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttc |
404 |
Q |
| |
|
||| |||| | ||||| | |||||||||||||||| | | ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13466 |
tcaaaggatttattcctagcaacattggtcatatggaaagtttacaatcactcgacttgtcaagaaaccatctttcaggtagaatgccaacaagcttttc |
13565 |
T |
|
| Q |
405 |
aaattt |
410 |
Q |
| |
|
|||||| |
|
|
| T |
13566 |
aaattt |
13571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20199 - 20267
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaaga |
69 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| ||||| |||||||||||||||||| || ||||||| |
|
|
| T |
20199 |
aatataactgggggaataccacaatgcttcagtcacatagttgctttatcaaatttgaagtctccaaga |
20267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30547 - 30615
Alignment:
| Q |
1 |
aatattacaggggaaataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaaga |
69 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| ||||| |||||||||||||||||| || ||||||| |
|
|
| T |
30547 |
aatataactgggggaataccacaatgcttcagtcacatagttgctttatcaaatttgaagtctccaaga |
30615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 13180 - 13233
Alignment:
| Q |
16 |
ataccacaatgcttcagtaacatacttgctttatcaaatttgatgtttccaaga |
69 |
Q |
| |
|
|||||| ||||||||||| ||||| | |||||||||||||||| |||||||||| |
|
|
| T |
13180 |
ataccagaatgcttcagtcacatagtcgctttatcaaatttgaagtttccaaga |
13233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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