View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_low_15 (Length: 343)
Name: NF2209_low_15
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 54988372 - 54988060
Alignment:
| Q |
13 |
aatataatgtccgaaactatactatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgatattg |
112 |
Q |
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| T |
54988372 |
aatataatgtccgaaactatactatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgatattg |
54988273 |
T |
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| Q |
113 |
atcaacagtaacatcgccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatctaga |
212 |
Q |
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| T |
54988272 |
atcaacagtaacatcaccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatctaga |
54988173 |
T |
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| Q |
213 |
agacactgaaatgttgttatcatgacctggtttatgagtgaagacatcccagtcgctcaaacctttgccatcactcaagtaagcaccttcatactataat |
312 |
Q |
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| T |
54988172 |
agacacggaaatgttgttatcatgacctggtttatgagtgaagacatcccagttgctcaaacctttgccatcactcaagtaagcaccttcatactataat |
54988073 |
T |
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| Q |
313 |
attaagtttaata |
325 |
Q |
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| T |
54988072 |
attaagtttaata |
54988060 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 7918865 - 7918832
Alignment:
| Q |
274 |
cctttgccatcactcaagtaagcaccttcatact |
307 |
Q |
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| T |
7918865 |
ccttttccatcactcaagtaagcaccttcatact |
7918832 |
T |
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