View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2209_low_16 (Length: 309)

Name: NF2209_low_16
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2209_low_16
NF2209_low_16
[»] chr7 (1 HSPs)
chr7 (15-309)||(48486314-48486610)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 48486314 - 48486610
Alignment:
Q  15 catcatttaaactcttgtgtttcattcagtggtcataggtgattaattt--gttatatatttcaattcatgagtcatgttcaaacatgatttatgacatc 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48486314 catcatttaaactcttatgtttcattcagtggtcataggtgattaatttttgttatatatttcaattcatgagtcatgctcaaacatgatttatgacatc 48486413  T
Q  113 aaagaccaagaagtatgctataaccaaatcagatgctagagcatatatagcccttaacccttcctactaagaagaatgccgactaatgcatgtagcctat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486414 aaagaccaagaagtatgctataaccaaatcagatgctagagcatatatagcccttaacccttcctactaagaagaatgccgactaatgcatgtagcctat 48486513  T
Q  213 gtcatctaaattacaagttcacacacaattagatctctatattttatgctaaacttaacttatagattcacagcatcatcagtcatgaatcatgatc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486514 gtcatctaaattacaagttcacacacaattagatctctatattttatgctaaacttaacttatagattcacagcatcatcagtcatgaatcatgatc 48486610  T

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