View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_low_17 (Length: 265)
Name: NF2209_low_17
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 42313373 - 42313477
Alignment:
| Q |
18 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagatttttcgcaatgcccta |
117 |
Q |
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| T |
42313373 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagatttttcgcaatgcccta |
42313472 |
T |
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| Q |
118 |
cacac |
122 |
Q |
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||||| |
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| T |
42313473 |
cacac |
42313477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 42313543 - 42313615
Alignment:
| Q |
187 |
ctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaaga |
259 |
Q |
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| T |
42313543 |
ctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaaga |
42313615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 47977968 - 47978070
Alignment:
| Q |
19 |
tatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagatttttcgcaatgccctac |
118 |
Q |
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| T |
47977968 |
tatccacttctttgataagacaatattgacaaatccaggacccgcaacagagcacgattctaccatctctgatggagggagatttttcataatggcctac |
47978067 |
T |
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| Q |
119 |
aca |
121 |
Q |
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||| |
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| T |
47978068 |
aca |
47978070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 39711881 - 39711805
Alignment:
| Q |
18 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatgga |
94 |
Q |
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| T |
39711881 |
ctatccacttatttgataagacaatattcacaaatccaagaccggcaacagagcacgactctaccatatctgatgga |
39711805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 39711708 - 39711635
Alignment:
| Q |
186 |
tctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaaga |
259 |
Q |
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|||| |||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||| ||| ||||||| |
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| T |
39711708 |
tctctgattatacctctccaagtgagcgtggatttttgaattccggttgttgctctttaatcttagcaaaaaga |
39711635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 51564912 - 51564827
Alignment:
| Q |
18 |
ctatccacttctttgataagacgatattcacatatccagaaccggcaacaaagcacgattctaccatctctgatggagggagattt |
103 |
Q |
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||||||| |||||||||||||| ||||| ||| |||||| ||| |||||| |||| |||| ||||| | |||||||||||||||| |
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| T |
51564912 |
ctatccagttctttgataagacaatattgacaaatccaggacccgcaacagagcaagattggaccatttgtgatggagggagattt |
51564827 |
T |
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