View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_low_2 (Length: 685)
Name: NF2209_low_2
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 9 - 666
Target Start/End: Complemental strand, 4179202 - 4178545
Alignment:
| Q |
9 |
agcagagaggagcctgatacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaa |
108 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179202 |
agcagagaggagcctggtacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaa |
4179103 |
T |
|
| Q |
109 |
cttttgtcaccaatttttacaaatgttggcaactgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179102 |
cttttgtcaccaatttttacaaatgttggcaactgtgactctgtctgcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgc |
4179003 |
T |
|
| Q |
209 |
taaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttcc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179002 |
taaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttcc |
4178903 |
T |
|
| Q |
309 |
acctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaat |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178902 |
acctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcgatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaat |
4178803 |
T |
|
| Q |
409 |
gtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttg |
508 |
Q |
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| T |
4178802 |
gtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttg |
4178703 |
T |
|
| Q |
509 |
catttcctactgagagacatggaattgggttccccctttcaacaagttaataattgagatcttttttatgtttatggctgtatccaatttcagtaatgta |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178702 |
catttcctactgagagacatggaattgggttccccctttcaacaagttaataattgagatcttttttatgtttatggctgtatccaatttcagtaatgta |
4178603 |
T |
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| Q |
609 |
tttgattaatgaattattggcgtttttatgtttatggttttatattcaatctaagtgc |
666 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4178602 |
tttgattaatgaattattggcgtttttatgtttatggttttatattaaatctaagtgc |
4178545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 580
Target Start/End: Complemental strand, 4168261 - 4167704
Alignment:
| Q |
23 |
tgatacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaat |
122 |
Q |
| |
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||||||| | ||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||| || || || |||||||| |||||||| |
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| T |
4168261 |
tgatacaaacagctataagtttgacatttcagagcacggcacatttagcaaaccttctacctacaggcactgtccttgcattacaacttttatcaccaat |
4168162 |
T |
|
| Q |
123 |
ttttacaaatgttggcaactgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagat |
222 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||| ||||||| |||||| ||| |
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| T |
4168161 |
ctttacaaatattggcagctgtgactctgtcagcaagtggatgactgctgcacttgtgactctctgtggtgcatcatgctttctgctaagctttactgat |
4168062 |
T |
|
| Q |
223 |
agcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctg |
322 |
Q |
| |
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||| | |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4168061 |
agctttagagacagcaagggtaatattatttatgggtttgccacctttaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctg |
4167962 |
T |
|
| Q |
323 |
caaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaattgctt |
422 |
Q |
| |
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| ||||| |||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4167961 |
ctaaataccgcatacggtttatagattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatcggaatgtggtgaattgctt |
4167862 |
T |
|
| Q |
423 |
ttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactgag |
522 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
4167861 |
ttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgatttttgcagcatgcttttcgttacatttcctacagag |
4167762 |
T |
|
| Q |
523 |
agacatggaattgggttccccctttcaacaagttaataattgagatcttttttatgtt |
580 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
4167761 |
agacatggaattggcttccccctttcaacaagttaataattgagaaatcttttatgtt |
4167704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 184 - 558
Target Start/End: Original strand, 34944370 - 34944744
Alignment:
| Q |
184 |
ctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtggg |
283 |
Q |
| |
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||||||||||| ||||||||||| ||| ||| || |||||| | | ||||| || ||||| || |||||||| |||||||| || || ||||| ||| |
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| T |
34944370 |
ctatgtggtgcctcatgcttcctactatgcttcactgatagcttcaaagacaataaagggaacatatgttatggatttgccacatttaaaggcttatgga |
34944469 |
T |
|
| Q |
284 |
ttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgc |
383 |
Q |
| |
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| |||||||||||| | | |||||||| | || ||| ||||||||||| ||| ||| || ||||||||||||||||| ||||||||| |||| ||| | |
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| T |
34944470 |
tcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttcatgcatgcaattatgtcaattttggttttttc |
34944569 |
T |
|
| Q |
384 |
agcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggc |
483 |
Q |
| |
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||| |||||| |||||||||| |||||||| || || || |||||| ||| ||| | ||||| | ||||||| || || |||||||| | |||||| |
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| T |
34944570 |
agctattgcaatgtttgatcataatgtggttaactgtttctttccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggt |
34944669 |
T |
|
| Q |
484 |
gttttttgcagcatgcttttcgttgcatttcctactgagagacatggaattgggttccccctttcaacaagttaa |
558 |
Q |
| |
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||||| || |||||||| || ||||||||||||||| | |||||||||||||| ||||| |||||||||| |||| |
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| T |
34944670 |
gttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggcttcccactttcaacaaattaa |
34944744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 34947771 - 34947880
Alignment:
| Q |
253 |
tatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttca |
352 |
Q |
| |
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||||| |||||||| || || ||||| ||| | |||||||||||| | | |||||||| | || ||| ||||||||||| ||| ||| || ||||||| |
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| T |
34947771 |
tatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttgattgatttca |
34947870 |
T |
|
| Q |
353 |
tgcatgcaat |
362 |
Q |
| |
|
|||||||||| |
|
|
| T |
34947871 |
tgcatgcaat |
34947880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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