View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2209_low_21 (Length: 251)
Name: NF2209_low_21
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 66 - 251
Target Start/End: Original strand, 35563704 - 35563889
Alignment:
| Q |
66 |
tttaaaattgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaaaacaataacacaattatgaaatatatcat |
165 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35563704 |
tttaaaattgcaatatatcattaagctaaaattatgaaaaatatcattgaaacattacaaataagaagcaaaacaataacacaattatgaaatatatcat |
35563803 |
T |
|
| Q |
166 |
taaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaatttaatataataatta |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35563804 |
taaaattaattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgaccttttacaattgaatttaatataataatta |
35563889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 12819856 - 12819687
Alignment:
| Q |
82 |
atcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaaaacaataacacaattatgaaatatatcattaaaaataattatgaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12819856 |
atcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaaaacaataacacaattatgaaatatatcattaaaaataattatgaa |
12819757 |
T |
|
| Q |
182 |
tttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaatttaatataataatta |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12819756 |
tttcaatgtttcacaaaaaagaaatgtgaattttagtgacattttacaattgaatttaatataataatta |
12819687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 12819958 - 12819856
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaaattgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaaaacaa |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12819958 |
gtgttaaaaataattgtatataactttaaaattgcaatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaaaacaa |
12819859 |
T |
|
| Q |
142 |
taa |
144 |
Q |
| |
|
||| |
|
|
| T |
12819858 |
taa |
12819856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 248
Target Start/End: Original strand, 5360960 - 5361173
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa------attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagca |
135 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||| |||| || |||||||||||||||||||||||||||| ||||| |||||||| ||| | |
|
|
| T |
5360960 |
gtgttaaaaataattgtatataatttttaagtataaattgcaatatgtcgttaagctaaaattatgaaaaatatcatttaaacaataaaaatacgaatta |
5361059 |
T |
|
| Q |
136 |
aaacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatg-tttcacaaaaaagaaatgtgaattttagtgagcttttacaattga |
234 |
Q |
| |
|
| ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||| | | ||| ||||| |||||| |||||| |||| ||||||| |
|
|
| T |
5361060 |
agacagtagcacaattatgaaatatatcattaaaaataattgtgaatttcaatgtttttatataaatgaaatatgaattatagtgaaattttgcaattga |
5361159 |
T |
|
| Q |
235 |
atttaatataataa |
248 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5361160 |
atttaatataataa |
5361173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 39050441 - 39050230
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39050441 |
gtgttaaaaataattgtatataagtttaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcattgaaacattaaaaataagaagcaa |
39050342 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| | |||| |||| ||||||||| |
|
|
| T |
39050341 |
aacagtaacaaaattatgaaatatatcattaaaaataattgtgaatttcaatgttttataaaaaagaaatatgaattattgtgacatttttcaattgaat |
39050242 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39050241 |
ttaatataataa |
39050230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 33583136 - 33583172
Alignment:
| Q |
88 |
aagctaaaattatgaaaaatatcattgaaacattaaa |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33583136 |
aagctaaaattatgaaaaatataattgaaacattaaa |
33583172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 18656258 - 18656047
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18656258 |
gtgttaaaaataattatatataagtttaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcattgaaacattaaaaataagaagcaa |
18656159 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| | |||| |||| ||||||||| |
|
|
| T |
18656158 |
aacagtaacaaaattatgaaatatatcattaaaaataattgtgaatttcaatgttttataaaaaagaaatatgaattattgtgacattttgcaattgaat |
18656059 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18656058 |
ttaatataataa |
18656047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 4454995 - 4454784
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4454995 |
gtgttaaaaataattgtatataaattcaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcattgaaacattaaaaataagaagcaa |
4454896 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| | | |||| |||| ||||||||| |
|
|
| T |
4454895 |
aacaataacaaaattatgaaatatatcattaaaaataatattgaatttcaatgttttataaaaaagaaatatgaactattgtgacattttgcaattgaat |
4454796 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4454795 |
ttaatataataa |
4454784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 35303694 - 35303483
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35303694 |
gtgttaaaaataattgtatataagtttaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcattgaaacattaaaaataagaagcaa |
35303595 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| | ||| |||| ||||||||| |
|
|
| T |
35303594 |
aacagtaacaaaattatgaaatatatcattaaaaataattgtgaatttcaatgttttataaaaaagaaatatgaattattgtgccattttgcaattgaat |
35303495 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35303494 |
ttaatataataa |
35303483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 30962694 - 30962483
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaa-----aattgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
30962694 |
gtgttaaaaataattgtatataattttaagtataaattgcaatatatcattaagataaaattatgaaaaatgtcatttaaacattaaaaataagaagtaa |
30962595 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
||| || |||||||||||||||||| || ||| |||||| ||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
30962594 |
gacagtagcacaattatgaaatatataataaaatataattgtgaatttcaatgttttataaaaaagaaatgtgaattctagtgattttttacaattgaat |
30962495 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30962494 |
ttaatataataa |
30962483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 24096529 - 24096318
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |
|
|
| T |
24096529 |
gtgttaaaaataattgtatataagtttaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcaatgaaacattaaaaataagaagaaa |
24096430 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| | |||| |||| ||||||||| |
|
|
| T |
24096429 |
aacagtaacaaaattatgaaatatatcattaaaaataattgtgaatttcaatgttttataaaaaagaaatatgaattattgtgacattttgcaattgaat |
24096330 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24096329 |
ttaatataataa |
24096318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 4224708 - 4224497
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4224708 |
gtgttaaaaataattgtatataagtttaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcattgaaacattaaaaataagaagcaa |
4224609 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaatgtgaattttagtgagcttttacaattgaat |
236 |
Q |
| |
|
||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| | |||| |||| ||||||||| |
|
|
| T |
4224608 |
aactgtaacaaaattattaaatatatcattaaaaataattgtgaatttcaatgttttataaaaaagaaatatgaattattgtgacattttgcaattgaat |
4224509 |
T |
|
| Q |
237 |
ttaatataataa |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4224508 |
ttaatataataa |
4224497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 55503 - 55334
Alignment:
| Q |
42 |
gtgttaaaaataattgtatataactttaaa-----attgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaaaataagaagcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55503 |
gtgttaaaaataattgtatataagtttaaatataaattgcaatatatcattaagctaaaattaagaaaaatatcattgaaatattaaaaataagaagcaa |
55404 |
T |
|
| Q |
137 |
aacaataacacaattatgaaatatatcattaaaaataattatgaatttcaatgtttcacaaaaaagaaat |
206 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
55403 |
aacagtaacaaaattatgaaatatatcattaaaaataattgtgaatttcaatgttttataaaaaagaaat |
55334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 9407444 - 9407495
Alignment:
| Q |
73 |
ttgcgatatatcattaagctaaaattatgaaaaatatcattgaaacattaaa |
124 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
9407444 |
ttgcaatatatcattaaactaaaattatgaaaaagataattgaaacattaaa |
9407495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University