View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_low_7 (Length: 432)
Name: NF2209_low_7
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 36289045 - 36289476
Alignment:
| Q |
1 |
cataaaagggtttgagccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgagagaggtggt |
100 |
Q |
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| T |
36289045 |
cataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtaagaggatgactccattgaagagtgagagaggtggt |
36289144 |
T |
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| Q |
101 |
aatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaag |
200 |
Q |
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| T |
36289145 |
aatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaag |
36289244 |
T |
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| Q |
201 |
gaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgatgttcaaaggttaga |
300 |
Q |
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| T |
36289245 |
gaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgattttcaaaggttaga |
36289344 |
T |
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| Q |
301 |
aaatcaaggaaatacactcaacattcgtcttgctgattctgatttaggtaaagaaaagattcattatttttaattggtaacattagtttcccagttttga |
400 |
Q |
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| T |
36289345 |
aaatcaaggaaatacactcaacattcgtcttgctgattctgatttaggtaaagaaaagattcattatttttaattggtaacattagtttcccagttttga |
36289444 |
T |
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| Q |
401 |
tgtcaggttgtaatgttagcatgaaaatgata |
432 |
Q |
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| T |
36289445 |
tgtcaggttgtaatgttagcatgaaaatgata |
36289476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 14521329 - 14521216
Alignment:
| Q |
179 |
gttgatagtaaggattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagt |
278 |
Q |
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||||||| ||||||||||||||| |||||| || ||||| |||||||||||| |||| | | | | ||||||||| ||||||||||||||||| || | |
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| T |
14521329 |
gttgatactaaggattgtgaaggtaattgtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatggagatt |
14521230 |
T |
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| Q |
279 |
tagttgatgttcaa |
292 |
Q |
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| T |
14521229 |
tggtcgatgttcaa |
14521216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 12096572 - 12096373
Alignment:
| Q |
1 |
cataaaagggtttgagccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgagagaggtggt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| || |
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| T |
12096572 |
cataaaagggtttgagccaaaggatgtgaaaagttgggatagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggcagt |
12096473 |
T |
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| Q |
101 |
aatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaag |
200 |
Q |
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| T |
12096472 |
aatagttttggtggagaagatggttttttggtgcaaaggattttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaag |
12096373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 2692243 - 2692142
Alignment:
| Q |
191 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgatgttc |
290 |
Q |
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||||||||||| |||||| || |||||| |||||||||||| |||| | | | ||||||||||| |||||| ||||| |||| || || |||||||||| |
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| T |
2692243 |
gattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttc |
2692144 |
T |
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| Q |
291 |
aa |
292 |
Q |
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|| |
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| T |
2692143 |
aa |
2692142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 2699942 - 2699847
Alignment:
| Q |
191 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgat |
286 |
Q |
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|||||| |||| |||||| | ||||| ||||||||||||| |||| | | | |||||||||||| |||||||||||| |||| || || |||||| |
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| T |
2699942 |
gattgtaaaggtaattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgat |
2699847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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