View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209_low_8 (Length: 423)
Name: NF2209_low_8
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 82 - 412
Target Start/End: Original strand, 50788151 - 50788487
Alignment:
| Q |
82 |
gacaaagattaagacgagctggatatgacaaaacaaattgtgataagagaaagcatgagaaagtgatgtatcatagattcaaatctttgaagacaaatta |
181 |
Q |
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| T |
50788151 |
gacaaagattaagacgagctggatatgacaaa-caaattgtgataagagaaagcatgagaaagtgatgtatcatagattcaaatctttgaagacaaatta |
50788249 |
T |
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| Q |
182 |
aaatatgatccaagtttagaagaaattaagacatgccagtccagattcaatgtcacttatctatcaagtacagtccacgttgtcatttggaatttctcca |
281 |
Q |
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| T |
50788250 |
aaatatgatccaagtttagaagaaattaagacatgccagtccagattcaatgtcacttatctatcaagtacagtccacgttgtcatttggaatttctcca |
50788349 |
T |
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| Q |
282 |
attctctacttatggatttcttcaaattaagtgccttaattactttcttataatgctactaatttattctactcattgatcatcc-------nnnnnnnn |
374 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50788350 |
attctctacttatggatttcttcaaattcagtgccttaattactttcttataatgctactaatctattctactcattgatcatccaaaaaaaaaaaaaaa |
50788449 |
T |
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| Q |
375 |
cttttgtcccattatacataccatgattgcctaccttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
50788450 |
cttttgtcccattatacataccatgattgcctaccttt |
50788487 |
T |
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