View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2209_low_9 (Length: 418)

Name: NF2209_low_9
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2209_low_9
NF2209_low_9
[»] chr5 (7 HSPs)
chr5 (6-160)||(33897472-33897627)
chr5 (16-160)||(32623011-32623155)
chr5 (69-160)||(8760208-8760299)
chr5 (58-156)||(813945-814038)
chr5 (99-161)||(6460561-6460623)
chr5 (114-160)||(22638803-22638849)
chr5 (108-142)||(36745546-36745580)
[»] scaffold0074 (1 HSPs)
scaffold0074 (6-160)||(54920-55074)
[»] chr3 (14 HSPs)
chr3 (7-161)||(35564085-35564230)
chr3 (23-160)||(45103347-45103484)
chr3 (86-160)||(2848494-2848568)
chr3 (106-160)||(51536374-51536428)
chr3 (106-160)||(53612638-53612692)
chr3 (69-160)||(33635785-33635876)
chr3 (104-161)||(29728803-29728860)
chr3 (114-163)||(30464494-30464543)
chr3 (69-161)||(10258313-10258405)
chr3 (114-160)||(23241319-23241365)
chr3 (106-140)||(42908684-42908718)
chr3 (104-161)||(11334776-11334832)
chr3 (325-357)||(16680019-16680051)
chr3 (106-142)||(39851435-39851471)
[»] chr7 (14 HSPs)
chr7 (6-112)||(24096011-24096117)
chr7 (106-161)||(36098823-36098878)
chr7 (86-160)||(11733479-11733553)
chr7 (69-142)||(36859040-36859113)
chr7 (69-160)||(29984148-29984239)
chr7 (118-160)||(1583219-1583261)
chr7 (104-161)||(20130580-20130637)
chr7 (107-160)||(34258499-34258552)
chr7 (106-160)||(16197972-16198026)
chr7 (114-160)||(34190958-34191004)
chr7 (120-161)||(10991934-10991975)
chr7 (104-161)||(44605040-44605097)
chr7 (69-142)||(47424630-47424703)
chr7 (114-142)||(47424408-47424436)
[»] chr1 (13 HSPs)
chr1 (198-299)||(813915-814016)
chr1 (108-165)||(28235715-28235772)
chr1 (117-160)||(31985152-31985195)
chr1 (106-160)||(32364977-32365031)
chr1 (119-161)||(46546114-46546156)
chr1 (128-160)||(42867022-42867054)
chr1 (7-79)||(43060770-43060842)
chr1 (107-161)||(12793608-12793662)
chr1 (114-160)||(44258541-44258587)
chr1 (108-141)||(18033535-18033568)
chr1 (106-139)||(20726846-20726879)
chr1 (118-158)||(30787924-30787964)
chr1 (128-160)||(50656386-50656418)
[»] chr4 (7 HSPs)
chr4 (78-161)||(12819357-12819440)
chr4 (58-160)||(2860254-2860352)
chr4 (106-162)||(41219945-41220001)
chr4 (117-160)||(25511479-25511522)
chr4 (83-160)||(10005086-10005162)
chr4 (119-160)||(41867736-41867777)
chr4 (128-161)||(44352851-44352884)
[»] chr8 (10 HSPs)
chr8 (23-100)||(4454507-4454584)
chr8 (106-160)||(40484689-40484743)
chr8 (106-159)||(14910919-14910972)
chr8 (116-160)||(9457413-9457457)
chr8 (128-160)||(42064207-42064239)
chr8 (106-160)||(3656573-3656627)
chr8 (114-160)||(13486455-13486501)
chr8 (126-160)||(14269916-14269950)
chr8 (114-160)||(27678559-27678605)
chr8 (127-161)||(27844955-27844989)
[»] chr6 (5 HSPs)
chr6 (69-160)||(22350471-22350562)
chr6 (121-160)||(29291646-29291685)
chr6 (121-161)||(24067317-24067357)
chr6 (88-163)||(24431498-24431573)
chr6 (114-160)||(21528099-21528145)
[»] chr2 (12 HSPs)
chr2 (86-160)||(29523122-29523196)
chr2 (33-161)||(30962169-30962295)
chr2 (86-160)||(18541487-18541561)
chr2 (116-160)||(19262286-19262330)
chr2 (86-160)||(39061161-39061235)
chr2 (114-162)||(7502182-7502230)
chr2 (118-161)||(3989764-3989807)
chr2 (69-160)||(7154338-7154429)
chr2 (69-160)||(31901772-31901863)
chr2 (127-161)||(23292315-23292349)
chr2 (114-160)||(37314227-37314273)
chr2 (119-160)||(12341198-12341239)
[»] scaffold0131 (1 HSPs)
scaffold0131 (106-161)||(7196-7251)
[»] scaffold0036 (1 HSPs)
scaffold0036 (106-160)||(52713-52767)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 33897472 - 33897627
Alignment:
Q  6 cgagtcaccggtttaatccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatct 105  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| |  |||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  33897472 cgagtcgccggtttaatccggttctggccgagtttgaccggttcacaacggttcaatgacatatccgatccaataagtggaccggaccggctaaccatct 33897571  T
Q  106 ggttcacagtcggaccggttcgaccgg-ccggtccggtccgagttttaaaactatg 160  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  33897572 ggttcacggtcggaccggttcgaccggtccggtccggtctgagttttaaaactatg 33897627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 32623155 - 32623011
Alignment:
Q  16 gtttaatccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatctggttcacagt 115  Q
    ||||| ||||||| ||| ||||||  ||| |||||||| || |||||||||| ||||||||||| ||| |||||||||| || | |  | |||||   ||    
T  32623155 gtttattccggttttggtcgagttacaccggttcatagcggatcaataacatgaccgatccaataagttgaccgaaccgacttatccaccggttcctggt 32623056  T
Q  116 cggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  32623055 cggaccggttcgaccggccggtccgatccgagttttaaaactatg 32623011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 8760299 - 8760208
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||  ||  |||||||||| || || || ||||||| |||||||||||||||||||||| |||||||||  ||| |||||||||    
T  8760299 accgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccgatccggtccggttttcaaaactatg 8760208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 814038 - 813945
Alignment:
Q  58 tcaataacataaccgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaac 156  Q
    |||||| ||||||||||||||| |||| |||| |||| | |     ||||||||| || | ||||||||||||||||||||| ||||||||||||||||    
T  814038 tcaatagcataaccgatccaataagtgaaccggaccgccca-----ctggttcacggttgaaccggttcgaccggccggtccagtccgagttttaaaac 813945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 6460561 - 6460623
Alignment:
Q  99 accatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||| ||||||||||||||| |||||||||||||||||| || || |||| ||||||||||    
T  6460561 accatccggttcacagtcggactggttcgaccggccggtcctgttcgtgtttcaaaactatgg 6460623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 22638803 - 22638849
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||| ||||||||||||| ||||| ||| |||||||||    
T  22638803 gtcggaccggttcaaccggccggtccgatccgattttcaaaactatg 22638849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 36745580 - 36745546
Alignment:
Q  108 ttcacagtcggaccggttcgaccggccggtccggt 142  Q
    ||||| |||||||||||||||||||||||||||||    
T  36745580 ttcacggtcggaccggttcgaccggccggtccggt 36745546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 55074 - 54920
Alignment:
Q  6 cgagtcaccggtttaatccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatct 105  Q
    |||||| | ||||||| || ||||||||||||||||||  ||||| |  |||||||| ||||| |||||||||| ||||||||| ||||||||||||||     
T  55074 cgagtcgctggtttaagccagttctggccgagtttgactggttcacaacggttcaatgacatatccgatccaataagtggaccggaccggctaaccatcc 54975  T
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||| |||||||| ||||||||||||||||| || |||||||||||||||||    
T  54974 ggttcacggtcggaccagttcgaccggccggtccagttcgagttttaaaactatg 54920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 35564085 - 35564230
Alignment:
Q  7 gagtcaccggtttaatccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatctg 106  Q
    |||||||||||||||||||||||||||||||||||| | ||||  || ||||||||| |||||||||||||||||||||||||||||| |||| | ||||    
T  35564085 gagtcaccggtttaatccggttctggccgagtttgatcggttcgcagcggttcaatagcataaccgatccaattagtggaccgaaccgactaaacctctg 35564184  T
Q  107 gttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||         |||||||| ||||| ||||| | ||||||||||||||||||    
T  35564185 gttca---------cggttcgatcggccagtccgatacgagttttaaaactatgg 35564230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 45103484 - 45103347
Alignment:
Q  23 ccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccg 122  Q
    ||||||| |||||||||  ||| |||| ||| |  |||||| ||||||||||||||| |||| |||| ||||||| | |  | ||||||| |||| ||||    
T  45103484 ccggttcaggccgagttacaccggttcgtagcgagtcaatagcataaccgatccaataagtgaaccggaccggcttatccaccggttcacggtcgaaccg 45103385  T
Q  123 gttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  45103384 gttcgatcggccggtccggtccgagttttaaaattatg 45103347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 2848568 - 2848494
Alignment:
Q  86 accgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||| || || || ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  2848568 accgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 2848494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 51536428 - 51536374
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||    
T  51536428 ggttcacggtcggaccggttcgaccggccggtccgatccggtttttaaaactatg 51536374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 53612638 - 53612692
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||    
T  53612638 ggttcgcagtccgaccggttcgaccggccgatccggtccgaattttaaaactatg 53612692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 33635785 - 33635876
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||  ||  |||||||||| || || || | ||||| |||||||||||||||||||||| |||||||||  ||| |||||||||    
T  33635785 accgatccaatatgtcaaccgaaccggttacccctccgattcacggtcggaccggttcgaccggccgatccggtccggttttcaaaactatg 33635876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 29728803 - 29728860
Alignment:
Q  104 ctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||||| |||||||||||||||||||||||||||  ||   ||||||||||||||    
T  29728803 ctggttcacggtcggaccggttcgaccggccggtccgagccagtttttaaaactatgg 29728860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 30464543 - 30464494
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatggat 163  Q
    ||||||||||||| |||||||||||||||| || ||| ||||||||||||    
T  30464543 gtcggaccggttcaaccggccggtccggtctgattttcaaaactatggat 30464494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 10258405 - 10258313
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||||||||  ||  |||||||||| || || || ||||||| ||| ||| ||||||| ||||||||||||||||  ||| ||||||||||    
T  10258405 accgatccaatatgtcaaccgaaccggttacccctccggttcacggtccgactggttcgatcggccggtccggtccggttttcaaaactatgg 10258313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 23241365 - 23241319
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||| ||||||||||||||||||  ||| |||||||||    
T  23241365 gtcggaccggttcaaccggccggtccggtccggttttcaaaactatg 23241319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 42908684 - 42908718
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccg 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  42908684 ggttcacggtcggaccggttcgaccggccggtccg 42908718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 11334832 - 11334776
Alignment:
Q  104 ctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||||||||||||||||||  || |||||||||||||||  ||| ||||||||||    
T  11334832 ctggttcacagtcggaccggtt-aactggccggtccggtccggttttcaaaactatgg 11334776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 16680051 - 16680019
Alignment:
Q  325 gcttttctagtttggttcaccagatatatagtt 357  Q
    ||||||||||||||||||||||||| |||||||    
T  16680051 gcttttctagtttggttcaccagatttatagtt 16680019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 39851435 - 39851471
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggt 142  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  39851435 ggttcacggtcggaccggttcaaccggccggtccggt 39851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 24096117 - 24096011
Alignment:
Q  6 cgagtcaccggtttaatccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatct 105  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| |  |||||||| ||||| | |||||||| |||||| || ||||||||||||||     
T  24096117 cgagtcaccggtttaatccggttctggtcgagtttgaccggttcacaacggttcaatgacatatctgatccaataagtggatcggaccggctaaccatcc 24096018  T
Q  106 ggttcac 112  Q
    |||||||    
T  24096017 ggttcac 24096011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 36098878 - 36098823
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  36098878 ggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatgg 36098823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 11733553 - 11733479
Alignment:
Q  86 accgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||| || || || ||||||| |||||||||||||||||| |||||||||||||  ||| |||||||||    
T  11733553 accgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 11733479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 36859040 - 36859113
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggt 142  Q
    |||||||||||  ||  |||||||||| || || || ||||||| |||||||||||||||||||||||||||||    
T  36859040 accgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccggt 36859113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 29984148 - 29984239
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||  ||  |||||||||| || || || ||||||| ||||||||| ||| ||||||||||||||||||  ||| |||||||||    
T  29984148 accgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccgattcaaccggccggtccggtccggttttcaaaactatg 29984239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 1583219 - 1583261
Alignment:
Q  118 gaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  1583219 gaccggttcaaccggccggtccggtccgatttttaaaactatg 1583261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 20130637 - 20130580
Alignment:
Q  104 ctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||| | ||| ||||||||| ||||||||||||| ||||| ||||||||||||||    
T  20130637 ctggttcccggtctgaccggttcaaccggccggtccgatccgatttttaaaactatgg 20130580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 34258552 - 34258499
Alignment:
Q  107 gttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||| |||||||||||||||||| |||||||| |||| |||| |||||||||    
T  34258552 gttcacggtcggaccggttcgaccgaccggtccgatccgggtttcaaaactatg 34258499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 16198026 - 16197972
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||| ||||||||||| | |||||||||||| ||||| |||| |||||||||    
T  16198026 ggttcacggtcggaccggtccaaccggccggtccagtccgggtttcaaaactatg 16197972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 34191004 - 34190958
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||| ||||||||||||||||||||||| |  |||||||||||||    
T  34191004 gtcggatcggttcgaccggccggtccggtctggtttttaaaactatg 34190958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 10991975 - 10991934
Alignment:
Q  120 ccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||||||||| ||||||||||||| |||| ||||||||||    
T  10991975 ccggttcgaccgaccggtccggtccgggtttcaaaactatgg 10991934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 44605097 - 44605040
Alignment:
Q  104 ctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||||| |||  ||||||  ||||||||||||||  |||||||||||||||||||    
T  44605097 ctggttcactgtccaaccggtcggaccggccggtccgagccgagttttaaaactatgg 44605040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 47424630 - 47424703
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggt 142  Q
    |||||||||||  ||  |||||||||| || || || | ||||  |||||||||||||||||||||||||||||    
T  47424630 accgatccaatatgtcaaccgaaccggttacccctccgattcatggtcggaccggttcgaccggccggtccggt 47424703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 47424408 - 47424436
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggt 142  Q
    |||||||||||||||||||||||||||||    
T  47424408 gtcggaccggttcgaccggccggtccggt 47424436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 814016 - 813915
Alignment:
Q  198 aattattattgtagaaagaagaatcaattaatcaaatcttgcatgaattaaattaattaaaagttgattaatgcgatgaaaaaatagaacataatcccta 297  Q
    |||||| ||||||||||||||||| |||||| ||||  | |||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  814016 aattatcattgtagaaagaagaatgaattaaacaaaattcgcattaatcaaattaattaaaatttgattaatgcgatgaaaaaacagaacataaacccta 813917  T
Q  298 at 299  Q
    ||    
T  813916 at 813915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 28235715 - 28235772
Alignment:
Q  108 ttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatggatgt 165  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  28235715 ttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatgcatgt 28235772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 31985195 - 31985152
Alignment:
Q  117 ggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  31985195 ggaccggtccgaccggccggtccggtccgagttttaaaactatg 31985152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 32364977 - 32365031
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||| |||||||||||||||||||||||||||  |||  |||||||||||||    
T  32364977 ggttcacggtcggaccggttcgaccggccggtccgagccggtttttaaaactatg 32365031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 46546114 - 46546156
Alignment:
Q  119 accggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  46546114 accggttcaaccggtcggtccggtccgagttttaaaactatgg 46546156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 42867022 - 42867054
Alignment:
Q  128 accggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||||||||||||||||||||||||    
T  42867022 accggccggtccggtccgagttttaaaactatg 42867054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 43060842 - 43060770
Alignment:
Q  7 gagtcaccggtttaatccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaat 79  Q
    |||||||||||||| ||||||||||||||||||  |||  ||| ||| |  |||||||||||| |||||||||    
T  43060842 gagtcaccggtttattccggttctggccgagttgcaccgtttcgtagcgagtcaataacataatcgatccaat 43060770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 12793608 - 12793662
Alignment:
Q  107 gttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||| |||||||||||||||| | |||||||||||||  ||| ||||||||||    
T  12793608 gttcacggtcggaccggttcgactgaccggtccggtccggttttcaaaactatgg 12793662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 44258541 - 44258587
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  44258541 gtcggaccggttcaaccggacggtccggtccgattttcaaaactatg 44258587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 18033535 - 18033568
Alignment:
Q  108 ttcacagtcggaccggttcgaccggccggtccgg 141  Q
    ||||| ||||||||||||||||||||||||||||    
T  18033535 ttcacggtcggaccggttcgaccggccggtccgg 18033568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 20726846 - 20726879
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtcc 139  Q
    ||||||| ||||||||||||||||||||||||||    
T  20726846 ggttcacggtcggaccggttcgaccggccggtcc 20726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 30787964 - 30787924
Alignment:
Q  118 gaccggttcgaccggccggtccggtccgagttttaaaacta 158  Q
    |||||||||||||| ||| |||| |||||||||||||||||    
T  30787964 gaccggttcgaccgaccgatccgatccgagttttaaaacta 30787924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 50656386 - 50656418
Alignment:
Q  128 accggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||| |||||||||||||||||||||||    
T  50656386 accggccgggccggtccgagttttaaaactatg 50656418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 12819440 - 12819357
Alignment:
Q  78 attagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||| ||||| ||||||||||||| || ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  12819440 attaatggactgaaccggctaaccctccggttcacggtcggaccggttcgactggccgatccggtccgagttttaaaactatgg 12819357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 2860254 - 2860352
Alignment:
Q  58 tcaataacataaccgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaact 157  Q
    |||||| ||||||||||||||| |||| |||| ||||||| |||     |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  2860254 tcaatagcataaccgatccaataagtgaaccggaccggcttaccc----gttcacggtcggaccggttcgaccggccggtccgatccgagttttaaaact 2860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 41220001 - 41219945
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgga 162  Q
    ||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  41220001 ggttcacggtcgaaccggttcaaccggccgatccggtccgagttttaaaactatgga 41219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 25511479 - 25511522
Alignment:
Q  117 ggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  25511479 ggaccggtccgaccggccggtccggtccgagttttaaaactatg 25511522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 10005162 - 10005086
Alignment:
Q  83 tggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||||| ||| ||| |||||  ||||||| |||||||||| ||||| || || ||||||||||||||||    
T  10005162 tggaccgaaccggcttacc-tctagttcatggtcggactggttcgaccgaccggttcgttctgagttttaaaactatg 10005086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 41867736 - 41867777
Alignment:
Q  119 accggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  41867736 accggttcgaccggccagtccggtccgggttttaaaactatg 41867777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 44352851 - 44352884
Alignment:
Q  128 accggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||||||||||||||||||||||||||||||    
T  44352851 accggccggtccggtccgagttttaaaactatgg 44352884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 4454584 - 4454507
Alignment:
Q  23 ccggttctggccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaac 100  Q
    |||||||||||||||||||||| ||||| |  |||||||||||||| ||||| |||| ||||||||| ||||||||||    
T  4454584 ccggttctggccgagtttgaccggttcacaacggttcaataacatatccgattcaataagtggaccggaccggctaac 4454507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 40484743 - 40484689
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  40484743 ggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 40484689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 14910919 - 14910972
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactat 159  Q
    ||||||| ||||||||||||||||||||||||||| ||||  ||| ||||||||    
T  14910919 ggttcacggtcggaccggttcgaccggccggtccgatccggttttcaaaactat 14910972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 9457413 - 9457457
Alignment:
Q  116 cggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||    
T  9457413 cggaccggttcgaccgcccggtccgatccgatttttaaaactatg 9457457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 42064207 - 42064239
Alignment:
Q  128 accggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||||||||||||||||||||||||    
T  42064207 accggccggtccggtccgagttttaaaactatg 42064239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 3656573 - 3656627
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagtttt-aaaactatg 160  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  3656573 ggttcacggtcggaccggttcaaccggccggtccggtcc-agttttcaaaactatg 3656627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 13486501 - 13486455
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||| ||||||||||||||||||  ||| |||||||||    
T  13486501 gtcggaccggttcaaccggccggtccggtccgcttttcaaaactatg 13486455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 14269916 - 14269950
Alignment:
Q  126 cgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||| ||||||||||||||||||||||||||||||    
T  14269916 cgactggccggtccggtccgagttttaaaactatg 14269950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 27678605 - 27678559
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||| ||||||||||||||||||  ||| |||||||||    
T  27678605 gtcggaccggttcaaccggccggtccggtccggttttcaaaactatg 27678559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 27844989 - 27844955
Alignment:
Q  127 gaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||||||||||||||| |||||||||||||||    
T  27844989 gaccggccggtccggtccgggttttaaaactatgg 27844955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 22350562 - 22350471
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||  ||  |||||||||| || || || ||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||    
T  22350562 accgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccggtccggttttcaaaactatg 22350471  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 29291685 - 29291646
Alignment:
Q  121 cggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  29291685 cggttcaaccggccggtccggtccgagttttaaaactatg 29291646  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 24067357 - 24067317
Alignment:
Q  121 cggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  24067357 cggttcgaccggccggtccggtccgattttcaaaactatgg 24067317  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 24431498 - 24431573
Alignment:
Q  88 cgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatggat 163  Q
    |||||||||| |||  ||||||||| ||| ||| |||  ||||||||||||||  |||||||| ||||||||||||    
T  24431498 cgaaccggcttacccactggttcacggtccgactggtctgaccggccggtccgtgccgagtttcaaaactatggat 24431573  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 21528145 - 21528099
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||  |||||||||||||||||| |||| |||||||||    
T  21528145 gtcggaccggttgaaccggccggtccggtccgggtttcaaaactatg 21528099  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 29523196 - 29523122
Alignment:
Q  86 accgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||| || ||||| ||||||| ||||||||||||||||| ||||||||||||||  ||| |||||||||    
T  29523196 accgaaccggttacccatccggttcacggtcggaccggttcgaccagccggtccggtccggttttcaaaactatg 29523122  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 30962295 - 30962169
Alignment:
Q  33 ccgagtttgaccagttcatagtggttcaataacataaccgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccgg 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||| ||||| || | |||||| || ||||||  | ||||||| ||||||||  ||| || ||    
T  30962295 ccgagtttgaccgattcatagaggttcaataacataatcgacccaataagcgaaccgaatcgactaacccaccggttcacggtcggacc--ttcaactgg 30962198  T
Q  133 ccggtccggtccgagttttaaaactatgg 161  Q
    ||||| ||||| |||||||||| ||||||    
T  30962197 ccggttcggtctgagttttaaatctatgg 30962169  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 18541487 - 18541561
Alignment:
Q  86 accgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||| || || || ||||||| ||||||| ||||||||||||||||||||||||  ||| |||||||||    
T  18541487 accgaaccggttacccctccggttcacggtcggactggttcgaccggccggtccggtccggttttcaaaactatg 18541561  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 19262330 - 19262286
Alignment:
Q  116 cggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  19262330 cggaccggctcgaccggccggtccggtccgatttttaaaactatg 19262286  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 39061235 - 39061161
Alignment:
Q  86 accgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||| || || || ||||||| |||||||| ||||||||||||||||| |||||  ||| |||||||||    
T  39061235 accgaaccggttacccctccggttcacggtcggaccagttcgaccggccggtccagtccggttttcaaaactatg 39061161  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 7502182 - 7502230
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatgga 162  Q
    ||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  7502182 gtcggaccggttgaaccggccggtccggtccgggtttcaaaactatgga 7502230  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 3989764 - 3989807
Alignment:
Q  118 gaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  3989764 gaccggtccgaccggccggtccggtccggtttttaaaactatgg 3989807  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 7154338 - 7154429
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||  ||  |||||||||| || || || ||||||| |||||||||||||||||||||| ||  |||||  ||| |||||||||    
T  7154338 accgatccaatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccgatctagtccggttttcaaaactatg 7154429  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 31901772 - 31901863
Alignment:
Q  69 accgatccaattagtggaccgaaccggctaaccatctggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    |||||||||||  ||  |||||||||  || || || ||||||| ||||||||||| |||||||||| |||||||||  ||| |||||||||    
T  31901772 accgatccaatatgtcaaccgaaccgattatccctccggttcacggtcggaccggtccgaccggccgatccggtccggttttcaaaactatg 31901863  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 23292349 - 23292315
Alignment:
Q  127 gaccggccggtccggtccgagttttaaaactatgg 161  Q
    |||||||||||| ||||||||||||||||||||||    
T  23292349 gaccggccggtcaggtccgagttttaaaactatgg 23292315  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 37314273 - 37314227
Alignment:
Q  114 gtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||| ||||||||||||||||||  ||| |||||||||    
T  37314273 gtcggaccggttcaaccggccggtccggtccggttttcaaaactatg 37314227  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 12341198 - 12341239
Alignment:
Q  119 accggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  12341198 accggttcgaccggccggtccgagccgggttttaaaactatg 12341239  T

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Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 7251 - 7196
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatgg 161  Q
    ||||||| ||| ||| ||||| ||||| ||||||||||||||||||||||||||||    
T  7251 ggttcacggtccgacgggttcaaccggacggtccggtccgagttttaaaactatgg 7196  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 52713 - 52767
Alignment:
Q  106 ggttcacagtcggaccggttcgaccggccggtccggtccgagttttaaaactatg 160  Q
    ||||||| ||||||||||||| ||||| ||||||| ||||  |||||||||||||    
T  52713 ggttcacggtcggaccggttcaaccggtcggtccgatccggtttttaaaactatg 52767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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