View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210-Insertion-1 (Length: 825)
Name: NF2210-Insertion-1
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 24960299 - 24959974
Alignment:
| Q |
7 |
atagtagatgagaggaatgctaatatgaatttcaggaatagaaatggtgctggaattttgccttatgagcttttgaagccaacatcagagcctggtgtaa |
106 |
Q |
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| T |
24960299 |
atagtagatgagaggaatgctaatatgaatttcaggaatagaaatggtgctggaattttgccttatgagcttttgaagccaacatcagagcctggtgtaa |
24960200 |
T |
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| Q |
107 |
caggaaaaggtgttccatatagtgtctctatttgagacacatgttgtggatgaatgaatatgtgctcaatttgaatgttgtattttgagctcactataat |
206 |
Q |
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| T |
24960199 |
caggaaaaggtgttccatatagtgtctctatttgagacacatgttgtggatgaat----atgtgctcaatttgaatgttgtattttgagctcactataat |
24960104 |
T |
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| Q |
207 |
gttaaataaatttttggtgtacaaccaaatatattagagatggtatggcaaaaattatatccaatccaacttgattacatccaagggcggctcaagagta |
306 |
Q |
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| T |
24960103 |
gttaaataaatttttggtgtacaaccaaatatattagagatggtaaggcaaaaattatatccaatccaacttgattacatccaagggcggttcaagagta |
24960004 |
T |
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| Q |
307 |
aggccactaaagtcctcgttttaggtcccc |
336 |
Q |
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| T |
24960003 |
aggtcactaaagtcctcgttttaggtcccc |
24959974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 450 - 714
Target Start/End: Complemental strand, 24959858 - 24959594
Alignment:
| Q |
450 |
ggaccggccttgattacatctgtagggagtgttcatctagccttcattacactatgctagcaagacactctctaactcatattccatgaaataattgaat |
549 |
Q |
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| T |
24959858 |
ggaccggccctaattacatctctaaggagtgtccatttagccttcattacactatactagcaagacactctctaactcatattccatgaaataatggaat |
24959759 |
T |
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| Q |
550 |
gaaatgagaaaccatgaaaaaatggttaatcattgattccannnnnnnattatcaatcattaacaaaatcttaaagaaagaatatcactactgaggtctg |
649 |
Q |
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| T |
24959758 |
gaaatgagaaaccatgaaaaaatggttaatcattgattccatttttttattatcaatcattaacaaaatcttaaagaaagaatatcactactgaggtctg |
24959659 |
T |
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| Q |
650 |
ggggtgtttctgtcatccttactgcaaattgattcaaaaactttctaatagaaattggtctcaca |
714 |
Q |
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| T |
24959658 |
ggggtgtttctgtcatccttactgcaaattgattcaaaaactttctaatagaaattggtctcaca |
24959594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 491 - 714
Target Start/End: Complemental strand, 24955318 - 24955098
Alignment:
| Q |
491 |
cttcattacactatgctagcaagacactctctaactca--tattccatgaaataattgaatgaaatgagaaaccatgaaaaaatggttaatc-attgatt |
587 |
Q |
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| T |
24955318 |
cttcgttacactatgctaggaacgcactctctacctcacatatcccaagaaataatggaatgaaatgtgaaactatgaaaaaatggttaatccattgatt |
24955219 |
T |
|
| Q |
588 |
ccannnnnnnattat--caatcattaacaaaatcttaaagaaagaatatcactactgaggtctgggggtgtttctgtcatccttactgcaaattgattca |
685 |
Q |
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| T |
24955218 |
ccatcttttctttttaccaatcattaactccatgttaaagaaataatattactacta--------gggtgtttctttcatccttactgcaaattgattca |
24955127 |
T |
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| Q |
686 |
aaaactttctaatagaaattggtctcaca |
714 |
Q |
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| T |
24955126 |
aaaactttctgataaaaattggtctcaca |
24955098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 717 - 818
Target Start/End: Complemental strand, 24955059 - 24954960
Alignment:
| Q |
717 |
gaaaaagtgatggtcctgattttaattgtaatactttgtttggagaaacttttgtataaaatatggtttataaggaattcctacattttctcgcaacatg |
816 |
Q |
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| T |
24955059 |
gaaaaagtgatggtggtgattttgatggcagtactttgattggagtaa--tttgtataaaatatggtttaataggaattcctacgttttcttgcaacatg |
24954962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 788 - 825
Target Start/End: Complemental strand, 24959518 - 24959480
Alignment:
| Q |
788 |
aaggaattcctacatttt-ctcgcaacatgaattaattg |
825 |
Q |
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| T |
24959518 |
aaggaattcctacatttttctcgcaacatgaattaattg |
24959480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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