View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210-Insertion-10 (Length: 656)
Name: NF2210-Insertion-10
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-10 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 253 - 656
Target Start/End: Complemental strand, 27217608 - 27217205
Alignment:
| Q |
253 |
aatagtatgaaaagtgtgtgagtgcattagagataatgaagttcgtagaagagaatctgaaattggcggcagagtctgagaatctattgggacattatcg |
352 |
Q |
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| T |
27217608 |
aatagtatgataagtgtgtgagtgcattagagataataaagttcgttgaagagaatctgaaattggcggcagagtctgagaatctattgggacattatcg |
27217509 |
T |
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| Q |
353 |
aatttggaaaaggaatgtgcgctttaggataatgataaggatgtgttgattgattttcagaatgaagctgaagaacgagcgagggaagattatttgcaag |
452 |
Q |
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| T |
27217508 |
aatttggaaaaggaatgtgcgctttatgataatgataaggatgtgttgattgattttcagaatgaagctgaagaacgagcgagggaggattgtttgcgag |
27217409 |
T |
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| Q |
453 |
ctgaagagttggaacgtgatttggttatccatcagatggagtcgaagaaatctcagcaagagaacgcacaagcgaccaaaagagcaaagcctatggtatg |
552 |
Q |
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| T |
27217408 |
ctgaagagttggaatgtgatttggttattcatcagatggagtcgaagaaatctcagcaagagaacgcacaagcgaccaaaagagcaaagcctgtggtatg |
27217309 |
T |
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| Q |
553 |
aattcaatattatatatcatatgataatagttgtagtaaaggtgtgtctagtatctgacatgtttctatacatgacgcttatgcgtgtggttattacttt |
652 |
Q |
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| T |
27217308 |
aattcaatattatatatcatatgataatagttgtagtaaaggcgtgtctagtatctgacatgtttctagacatgacgcttatgcgtgtggttattacttt |
27217209 |
T |
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| Q |
653 |
tagc |
656 |
Q |
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| T |
27217208 |
tagc |
27217205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 27217855 - 27217672
Alignment:
| Q |
6 |
caacaaagacttcaacaaaatggaatatcttttgatatcaactcgaaaatcatgccatcatcttgactggtgcagctcattatttggtccacctctaaag |
105 |
Q |
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| T |
27217855 |
caacaaagacttcaacaaaatggaatatctttagatatcaactcgaaaatcatgctatcatcttgactggtgcagctcattatttggtccacctctaaag |
27217756 |
T |
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| Q |
106 |
aatccgaacagaatctccacgatcagaacacttcactcctcaaaaaactaaaggaaaaagacaaactcatcgaacaatctaagg |
189 |
Q |
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| T |
27217755 |
aatccgaacagaatctccgcgatcagaacacttcactcctcaaaaaactaaaggaaaaagacaaactcatcgaacaatctaagg |
27217672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 254 - 503
Target Start/End: Complemental strand, 27240152 - 27239902
Alignment:
| Q |
254 |
atagtatgaaaagtgtgtgagtgcattagagataatgaagttcgtagaagagaatctgaaattggcggcagagtctgagaatctattgggacattatcga |
353 |
Q |
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| T |
27240152 |
atagtatgaagcgtgtgtgaatgcgttggcgataaagaagtttgttgaggagaatcagaaattggcggcggagtgtgagaatctgttggggcattgtaga |
27240053 |
T |
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| Q |
354 |
att-tggaaaaggaatgtgcgctttaggataatgataaggatgtgttgattgattttcagaatgaagctgaagaacgagcgagggaagattatttgcaag |
452 |
Q |
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| |||| |||||||||||| | || |||||||||| || | |||||||||||||||||||||||||||||||||||||||||| | | ||||| || |
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| T |
27240052 |
aaactggagaaggaatgtgcgttgtatgataatgatagagaagcgttgattgattttcagaatgaagctgaagaacgagcgagggaggcgtgtttgcgag |
27239953 |
T |
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| Q |
453 |
ctgaagagttggaacgtgatttggttatccatcagatggagtcgaagaaat |
503 |
Q |
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| T |
27239952 |
ctgaggaattggaacgtgatttggttttgtatcaattggagttgaagaaat |
27239902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 27202064 - 27201886
Alignment:
| Q |
10 |
aaagacttcaacaaaatggaatatcttttgatatcaactcgaaaatcatgccatcatcttgactggtgcagctcattatttggtccacctctaaagaatc |
109 |
Q |
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| T |
27202064 |
aaagacttcaacaatatagaatatcttttgatgtcatctcaaaaagcaagctttcttcttgactgctacagctcattattcggtgcgctataaaagaatc |
27201965 |
T |
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| Q |
110 |
cgaacagaatctccacgatcagaacacttcactcctcaaaaaactaaaggaaaaagacaaactcatcgaacaatctaagg |
189 |
Q |
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| T |
27201964 |
cgaa-agaatctctgcgatcagaacacttcactcctcaaaaatctaaaggaaaaagacgaactcatcgaacaatctaagg |
27201886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 27240331 - 27240239
Alignment:
| Q |
97 |
cctctaaagaatccgaacagaatctccacgatcagaacacttcactcctcaaaaaactaaaggaaaaagacaaactcatcgaacaatctaagg |
189 |
Q |
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|||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||| |||| |
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| T |
27240331 |
cctccaaagaatccgaacaaaatctccgcgatcagaacacttcactccttcaaaaactaaaagaaagagacgaactcattgaacaatccaagg |
27240239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 37578771 - 37578694
Alignment:
| Q |
10 |
aaagacttcaacaaaatggaatatcttttgatatcaactcgaaaatcatgccatcatcttgactggtgcagctcatta |
87 |
Q |
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| T |
37578771 |
aaagacttcaacaaaatggaatatcttttgatgtcatctcgaaaagcaagctatcttcttgacttgtgcagctcatta |
37578694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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