View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210-Insertion-11 (Length: 540)
Name: NF2210-Insertion-11
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 6454751 - 6454314
Alignment:
| Q |
8 |
tgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgcttgaaatcgcggccatagatgtgaggttgggag |
107 |
Q |
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| T |
6454751 |
tgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgcttgaaatcgcggccatagatgtgaggttggaag |
6454652 |
T |
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| Q |
108 |
tgttggttaaagtttcttgaaacaccttgaacttgatgacgatgaaggtgatgattatgatgatgtggattcatcaaatctgaatttccaaagcctaatc |
207 |
Q |
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| T |
6454651 |
tgttggttaaagtttcttgaaaccccttgaacttgatgacgatgaaggtgatgattatgatgatgtggattcatcaaatctgaatttccaaagcctaatc |
6454552 |
T |
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| Q |
208 |
tcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaactcacttccactactagctgaatcagaagtagttgatattgaacatat |
307 |
Q |
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| T |
6454551 |
tcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaattcacttccactactagctgaatcagaagtagttgatattgaacatat |
6454452 |
T |
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| Q |
308 |
atttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctggttctaacaaaggtgaaaataaagtatgcatt |
407 |
Q |
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| T |
6454451 |
atttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctggttctaacaaaggtgaaaataaagtatgcatt |
6454352 |
T |
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| Q |
408 |
ttaggatgtgatttaattagggtatagtatagagtact |
445 |
Q |
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| T |
6454351 |
ttaggatgtgatttaattagggtatagtatagagtact |
6454314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 505 - 540
Target Start/End: Complemental strand, 6454254 - 6454219
Alignment:
| Q |
505 |
agtgattatatgatcatgagtgagtcatgatttgca |
540 |
Q |
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| T |
6454254 |
agtgattatatgatcatgagtgagtcatgatttgca |
6454219 |
T |
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