View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210-Insertion-12 (Length: 477)
Name: NF2210-Insertion-12
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 477
Target Start/End: Original strand, 34416101 - 34416570
Alignment:
| Q |
7 |
actatgttgtacaggttcgttgcatctcaattggtatcgtaaatcgtttgagtatatgaaaccctgaattaattatgaaatttcttcaagtaaaaactaa |
106 |
Q |
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| T |
34416101 |
actatgttgtacaggtttgttgcatctcaattggtatcgtaaatcgtttgagtatatgaaaccctgaattaattatgaaatttcttcaagtaaaaactaa |
34416200 |
T |
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| Q |
107 |
atgatagtaatagtttgttttgtgcttttaattttccttggcgtttgattgcttaaaatttttcagcatgtgctggagcatggaaagccacatgaacgta |
206 |
Q |
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| T |
34416201 |
atgatagtaatagtttgttttgtgcttttaattttccttggcgtttgattgcttaaaatttttcagcatgtgctggagcatggaaagccacatgaacgta |
34416300 |
T |
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| Q |
207 |
ccgcgataataaaggaattcactgggcagatagtgcggatgagccagcagaagtttgcttctaatgttatagaaaagtgtctctcttttggaacacctac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34416301 |
ccgcgataataaaggaattcactgggcagatagtgcagatgagccagcagaagtttgcttctaatgttatagaaaagtgtctctcttttggaacacctac |
34416400 |
T |
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| Q |
307 |
ggagcgtcaagtccttgtgaatgagatgattggttctactgatgacaatgagcctctacaggtttgtgcatgaaaatgaatccctattacatcagctctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34416401 |
ggagcgtcaagtccttgtgaatgagatgattggttctactgatgacaatgagcctctacaggtttgtgcatgaaaatgaatccctattacatcagctctt |
34416500 |
T |
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| Q |
407 |
gttttgtcgcgccatactccttttagtcatcttttcttattatatccgaaaattacagcttcatatagttt |
477 |
Q |
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| T |
34416501 |
g-tttgtcgcgccatactccttttagtcatcttttcttattatatcctaaaattacagcttcatatagttt |
34416570 |
T |
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