View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2210-Insertion-13 (Length: 429)

Name: NF2210-Insertion-13
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2210-Insertion-13
NF2210-Insertion-13
[»] chr5 (2 HSPs)
chr5 (8-429)||(14900254-14900676)
chr5 (27-353)||(14906690-14907015)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 14900254 - 14900676
Alignment:
Q  8 tattctgcctagtatctacgattgtaatatgacatcttttaattacatattgactatttattgttgataaatttctgaatttgttagtttgattattgtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14900254 tattctgcctagtatctacgattgtaatatgacatcttttaattacatattgactatttattgttgataaatttctgaatttgttattttgattattgtg 14900353  T
Q  108 caaaatagcaggaaaagagaggcagtactccgccaccacggttaagacatgcaagagtgacgacttctgttggtgttattgacggagttactcaaaaaga 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14900354 caaaatagcaggaaaagagaggcggtactccgccaccacggttaagacatgcaagagtgacgacttctgttggtgttattgacggagttactcaaaaaga 14900453  T
Q  208 ggactcaagtgtcacctctcaacagaaatctcattctacaactaattcagcttttgatgattctaacaatcttagtctacccatgaatttaccagcaaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14900454 ggactcaagtgtcacctctcaacagaaatctcattctacaactaattcagcttttgatgattctaacaatcttagtctacccatgaatttaccagcaaga 14900553  T
Q  308 ctcggctccttgggaaaggtacattattgtaaaagctaaagattgaatttacttcaacttattactattcaagtcctaaacttctggtagtgtgatatca 407  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14900554 ctcggctccttgggaaaggtacatttttgtaaaagctaaagattaaacttacttcaacttattactattcaagtcctaaacttctggtagtgtgatatca 14900653  T
Q  408 cagccgta-ttgtggtcccttaa 429  Q
    ||||| || || |||||||||||    
T  14900654 cagccatatttatggtcccttaa 14900676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 353
Target Start/End: Original strand, 14906690 - 14907015
Alignment:
Q  27 gattgtaatatgacatcttttaattacatatt-gactatttattgttgataaattt-ctgaatttgttagt---ttgatta-ttgtgcaaaatagcagga 120  Q
    ||||| |||||  |||||||| ||||||| || |||||||||||||  |||||||| ||||||||||| ||   ||| ||| ||||||||||||| ||||    
T  14906690 gattgcaatatcgcatcttttgattacatgttagactatttattgtaaataaattttctgaatttgtttgtaatttggttaattgtgcaaaatagaagga 14906789  T
Q  121 a----aagagaggcagtactccgccaccacggttaagacatgcaagagtgacgacttctgttggtgttattgacggagttactcaaaaagaggactcaag 216  Q
    |    ||||||||  ||||||||||| |||| |   |||||||||||||  ||| || | |||||||||||| ||||| | ||||||||||||||||| |    
T  14906790 agggaaagagaggtggtactccgccagcacg-tggtgacatgcaagagtagcgagttttattggtgttattggcggagatgctcaaaaagaggactcagg 14906888  T
Q  217 tgtcacctctcaacagaaatctcattctacaactaattcagcttttgatgattctaacaatcttagtctacccatgaatttaccagcaagactcggctcc 316  Q
    ||||||||||||||| |||      ||||| ||| |||||||||||||||     ||||||||||| || || |||||||||||||||| | |  |||||    
T  14906889 tgtcacctctcaacaaaaa------tctactactgattcagcttttgatg----caacaatcttagcctcccaatgaatttaccagcaaaattgagctcc 14906978  T
Q  317 ttgggaaaggtacattattgtaaaagctaaagattga 353  Q
    |||||||||||||||| |||| |||||||||||||||    
T  14906979 ttgggaaaggtacatttttgttaaagctaaagattga 14907015  T

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