View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210-Insertion-16 (Length: 143)
Name: NF2210-Insertion-16
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-16 |
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| [»] chr6 (9 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 29365093 - 29364957
Alignment:
| Q |
7 |
agaaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29365093 |
agaaggttcaacattatctgagtatcattgctattgaatacctcatttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
29364994 |
T |
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| Q |
107 |
tgctgaatccaagtatgagcttttgaaaggtctgtca |
143 |
Q |
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| T |
29364993 |
tgctgaatccaagtatgagcttttgaaaggtctgtca |
29364957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 24258326 - 24258192
Alignment:
| Q |
9 |
aaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgctg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| || |
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| T |
24258326 |
aaggttcaacattatctgagtatcattgctattgaatacctcatttcccacagttatgcaaagtaattttgatctgtgaaaggtaaggttgaacatggtg |
24258227 |
T |
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| Q |
109 |
ctgaatccaagtatgagcttttgaaaggtctgtca |
143 |
Q |
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| T |
24258226 |
ctgaatccaagtctgagcttttgaaaggtctgtca |
24258192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 29346566 - 29346430
Alignment:
| Q |
7 |
agaaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
106 |
Q |
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| T |
29346566 |
agaagtttcaacattatctaagtatcattgctattgaatacctcatttcccacagttatgcaaagtcattttgatttgtgaaaggtaaggtggaacatgg |
29346467 |
T |
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| Q |
107 |
tgctgaatccaagtatgagcttttgaaaggtctgtca |
143 |
Q |
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| T |
29346466 |
tcctgaatccaagtccgagcttttgaaaggtctgtca |
29346430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 29899077 - 29899213
Alignment:
| Q |
7 |
agaaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
106 |
Q |
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| T |
29899077 |
agaaggttcaacattatctgagtatcattgctattgaatacctcatttcccacagttatgcaaagttattttgatttgcgaaagataaggttgaacatgg |
29899176 |
T |
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| Q |
107 |
tgctgaatccaagtatgagcttttgaaaggtctgtca |
143 |
Q |
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| T |
29899177 |
tgctgaatccaagttagatcttttgaaaggtctgtca |
29899213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 24262789 - 24262657
Alignment:
| Q |
7 |
agaaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| | |||||| |||||||||||||| |
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| T |
24262789 |
agaaggttcaacattatctgagtatcattgctattgaatacctcatttcccacagttatgcaaagtaattttgatttatgaaagataaggttgaacatgg |
24262690 |
T |
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| Q |
107 |
tgctgaatccaagtatgagcttttgaaaggtct |
139 |
Q |
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| T |
24262689 |
cgctgaatccaagttagatcttttgaaaggtct |
24262657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 29888140 - 29888261
Alignment:
| Q |
9 |
aaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgctg |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||| || |||||||||| ||||||||| | |
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| T |
29888140 |
aaggttcaacattatctgagtatcatttctattgaatacctcatttcccacagttatgcaaagttattttgatttgcgaaaggtaagtttgaacatg--g |
29888237 |
T |
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| Q |
109 |
ctgaatccaagtatgagcttttga |
132 |
Q |
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|||||||||||| ||||||||||| |
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| T |
29888238 |
ctgaatccaagtctgagcttttga |
29888261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 24271261 - 24271129
Alignment:
| Q |
9 |
aaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgctg |
108 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||| ||| | |||||||| || |||||||||| ||||||| | | |
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| T |
24271261 |
aaggttcaacattatccgagtatcattgctattgaatacctcatctcccacaattatggaaagttattttgatttgcgaaaggtaagtttgaacaag--g |
24271164 |
T |
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| Q |
109 |
ctgaatccaagtatgagcttttgaaaggtctgtca |
143 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
24271163 |
ctgaatccaagtctgagcttttgaaaggtctgtca |
24271129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 29355185 - 29355074
Alignment:
| Q |
7 |
agaaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
106 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||| | ||||| | | ||||||||||||||| ||||| |
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| T |
29355185 |
agaaggttcaacattggctgagtctcattgctattgaatacctcatttcccagagttatgcaagttatttttgtt-tctgaaaggtaaggttggacatgg |
29355087 |
T |
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| Q |
107 |
tgctgaatccaag |
119 |
Q |
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||||| ||||||| |
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| T |
29355086 |
tgctgtatccaag |
29355074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 29916468 - 29916556
Alignment:
| Q |
31 |
tcattgctattgaatacctcttttcccacagttatgcaaaatcatttt-gatctgtgaaaggtaaggttgaacatgctgctgaatccaa |
118 |
Q |
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|||||| ||||||||||||| | ||| ||||||||||||| | ||||| ||| ||||||| ||||||||||||||| ||| |||||||| |
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| T |
29916468 |
tcattgttattgaatacctcatctccgacagttatgcaaagttattttcgatttgtgaaaagtaaggttgaacatggtgccgaatccaa |
29916556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 19219800 - 19219665
Alignment:
| Q |
7 |
agaaggttcaacattatctgagtatcattgctattgaatacctcttttcccacagttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgc |
106 |
Q |
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||||| ||||| |||| ||||||||||||||||||||||| || ||||| |||||||||| || | |||||| | ||||||||||||||| ||||||| |
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| T |
19219800 |
agaagattcaaaattaattgagtatcattgctattgaatacttcatttccaacagttatgc-aatttattttggtttgtgaaaggtaaggtagaacatga |
19219702 |
T |
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| Q |
107 |
tgctgaatccaagtatgagcttttgaaaggtctgtca |
143 |
Q |
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|| ||||||||| | |||||||| ||| ||| ||||| |
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| T |
19219701 |
tgttgaatccaattttgagctttagaagggtttgtca |
19219665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 52844 - 52766
Alignment:
| Q |
60 |
agttatgcaaaatcattttgatctgtgaaaggtaaggttgaacatgctgctgaatccaagtatgagcttttgaaaggtct |
139 |
Q |
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||||||||||| ||||||| || ||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
52844 |
agttatgcaaagtcattttcatttgtgaaaggtaag-ttgaacatggtgctgaatccaagtctgagtttttgaaaggtct |
52766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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