View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2210-Insertion-4 (Length: 756)
Name: NF2210-Insertion-4
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 29338700 - 29338171
Alignment:
| Q |
8 |
gtattttactgcaagtgttgttagcacttttcatatataaaattaatggaaacaagagtggtcaaaactcaaaacctaggaaaaggacaagacctggcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29338700 |
gtattttactgcaagtgttgttagcacttttcatatataaaattaatggaaacaagagtggtcaaaac-------ctaggaaaaggacaagacctggcat |
29338608 |
T |
|
| Q |
108 |
ctctat---ttgttgtgacaataaacatctcattacatagttttcatgcaccaatcaaac---------------cagatcaataattgaattgatcaaa |
189 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29338607 |
ctgtataatttgttgtgacaataaacatctcattacatagttttcatgcaccaatcaaacactatattcctaaaccagatcaataattgaattgatcaat |
29338508 |
T |
|
| Q |
190 |
atattagtcttgatctgatcttaaatcactgataaaaaatgatgttatatggcgtttagtatatattattatgctggaagatatagaaggaaccaagtat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29338507 |
atattagtcttgatctgatcttaaatcactgataaaaaatgatgttatatggcgtttagtatatattattatgctggaagatatagaaggaaccaagtat |
29338408 |
T |
|
| Q |
290 |
gaaactaataaaagctgacccaatgcattatgcagttatctattctggagcacttttgaagtggagaaatgagaaagaaagaaaaagtgagaccagagag |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29338407 |
gaaactaataaaagctgacccaatgcattatggagttatctattctggagcacttttgaagtggagaaatgagaaagaaagaaaaagtgagaccagagag |
29338308 |
T |
|
| Q |
390 |
aatcttaggtgggggaataatgactaagaaaaactgttagcttgtgtttgcttttttctcatactatgttcaatcaacctagttgatgatgatttgaact |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29338307 |
aatcttaggtgggggaataatgactaagaaaaactgttagcttgtgtttgcttttttctcatactatgttcaatcaacctagttgatgatgatttgaact |
29338208 |
T |
|
| Q |
490 |
ttttgtacatgtaacagtaccagatgtttgctttcat |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29338207 |
ttttgtacatgtaacagtaccagatgtttgctttcat |
29338171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 567 - 756
Target Start/End: Complemental strand, 29338129 - 29337936
Alignment:
| Q |
567 |
ggtggtacaatgccacagacattgaaaagaatagcatatttcatcatatcttctcactgttttctactgttattattgtcatcgaaacgaaagagggccc |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29338129 |
ggtggtacaatgccacagacattgaaaagaatagcatatttcatcatatcttctcactgttttctactgttattattgtcatcgaaacgaaagagggccc |
29338030 |
T |
|
| Q |
667 |
ccggtattttatttga----tacgtacaaattgaagataaaattttattgtacatccgttagacccgtgatgttgtatgtggtaaaaaaccatc |
756 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29338029 |
ccggtattttattttatacgtacgtacaaattgaagataaaattttattgtacagccgttagacccgcgatgttgtatgtggtaaaaaaccatc |
29337936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University