View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2210-Insertion-5 (Length: 775)
Name: NF2210-Insertion-5
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210-Insertion-5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 668; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Complemental strand, 41437375 - 41436671
Alignment:
| Q |
8 |
gattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437375 |
gattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattgg |
41437276 |
T |
|
| Q |
108 |
aagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437275 |
aagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccatt |
41437176 |
T |
|
| Q |
208 |
ggaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437175 |
ggaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttcc |
41437076 |
T |
|
| Q |
308 |
gtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtcataccaacatt-ttttccatttcttgcccattgcttttca |
406 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41437075 |
gtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcataccaacatttttttccatttcttgcccattgcttttc- |
41436977 |
T |
|
| Q |
407 |
gagagatatgatttttgcatcttcatttggtttatcgtttagaataatttgtcggttgttttttcatctctttattcatctatgctgtcttccaggcttc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41436976 |
-agagatatgatttttgcatcttcatttggtttatcgtttagaataatttgtcggttgttttttcatctctttattcatctatgctgtcttccaggcttc |
41436878 |
T |
|
| Q |
507 |
tactgatcaacgtgcagtggataccgacattccttatcaaattggctcatttgccttcttcatgatccagcttctcggaattatagcagtgatgtctcag |
606 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41436877 |
tactgatcaaagtgcagtggataccgacattccttatcaaattggctcatttgccttcttcatgatccagcttctcggaattatagcagtgatgtctcag |
41436778 |
T |
|
| Q |
607 |
gttgcatggcaagtcttcattgtctttatacccatgatagcaattagcatttggtatcaggtaatgtttggaccaccaaggctttaccatcacagattat |
706 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41436777 |
gttgcatggcaagttttcattgtctttatacccatcatagcaattagcatttcgtatcaggtaatgtttggaccaccaaggctttaccatcacagattat |
41436678 |
T |
|
| Q |
707 |
ataccaa |
713 |
Q |
| |
|
||||||| |
|
|
| T |
41436677 |
ataccaa |
41436671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Complemental strand, 41450601 - 41449883
Alignment:
| Q |
8 |
gattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41450601 |
gattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagctcttcaaattgg |
41450502 |
T |
|
| Q |
108 |
aagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41450501 |
aagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttggttttgccatt |
41450402 |
T |
|
| Q |
208 |
ggaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450401 |
ggaagttctttatgcattcttgttagagcattgttacttgttacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttcc |
41450302 |
T |
|
| Q |
308 |
gtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtcataccaacattttttccatttcttgccca-ttgcttttca |
406 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
41450301 |
gtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcacactaacattttttccatttcttgcccatttgcttttc- |
41450203 |
T |
|
| Q |
407 |
gagagatatgatttttgcatcttcatttggtttatcgtttagaa---------taatttgtcggttg----ttttttcatctctt-tattcatctatgct |
492 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||||| || | || | || || ||| |||||||||||||| |||| ||||||||| |
|
|
| T |
41450202 |
-agatatatgatttttacatcttcagttggtttatccttaataaagtatgtttttatatgattcttgcccattttttcatctcttatatttatctatgct |
41450104 |
T |
|
| Q |
493 |
gtcttccaggcttctactgatcaacgtgcagtggataccgacattccttatcaaattggctcatttgccttcttcatgatccagcttctcggaattatag |
592 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41450103 |
gtcttccaggcttctactgaccaaagtgcagtggataccgacattccttatcaaattggttcatttgccttctccataatccagcttctcggaattatag |
41450004 |
T |
|
| Q |
593 |
cagtgatgtctcaggttgcatggcaagtcttcattgtctttatacccatgatagcaattagcatttggtatcaggtaatgtttggaccaccaaggcttta |
692 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450003 |
cagtgatgtctcaggttgcatggcaagttttcattgtctttatacccgtgatagcagttagcatttggtatcaggtaatgtttggaccaccaaggcttta |
41449904 |
T |
|
| Q |
693 |
ccatcacagattatataccaa |
713 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41449903 |
ccatcacagattatataccaa |
41449883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 708
Target Start/End: Complemental strand, 14239526 - 14238822
Alignment:
| Q |
8 |
gattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattgg |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
14239526 |
gattttcagtgtattggaagtatatcacaactgcatatgggggagttcttgtaccattcatattattggctcatattcttcttcaagctcttcaaattgg |
14239427 |
T |
|
| Q |
108 |
aagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccatt |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
14239426 |
aagcaactattggatggctttggcaactcccatctcagccgatgtcaagccaccgattgaaggaacaactcttatgaaagtctatgttggtttggccatt |
14239327 |
T |
|
| Q |
208 |
ggaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttcc |
307 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239326 |
ggaagttctctatgcattcttgttaaagggttgttacttgttacagctggttataagacagctactatactcttcaataaaatgcacttgtgcattttcc |
14239227 |
T |
|
| Q |
308 |
gtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtcataccaacattttttccatttcttgccca-ttgcttttca |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||| || || ||| |||| |
|
|
| T |
14239226 |
gtgccccgatgtcattttttgattctactccaagtggacgaatcctcaatagagtatgtcatactggcattttttccgtttctcgctcatttgaatttc- |
14239128 |
T |
|
| Q |
407 |
gagagatatgatttttgcatcttcatttggtt-tatc-----gtttagaataatttgtcggttgttttttcatctctttattcatctatgctgtcttcca |
500 |
Q |
| |
|
| |||||||||||||||||||||| ||| || | || ||| | ||| | || |||||| ||| ||| ||||||||||| || ||| || |
|
|
| T |
14239127 |
-atagatatgatttttgcatcttcagttgcttgtctcttggttttttttttttttttttttttttttttttatcactt-attcatctatgttgccttgca |
14239030 |
T |
|
| Q |
501 |
ggcttctactgatcaacgtgcagtggataccgacattccttatcaaattggctcatttgccttcttcatgatccagcttctcggaattatagcagtgatg |
600 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||| | | ||||||||||| | ||||||||||||| | ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
14239029 |
ggcttctactgaccaaagtgaagtggatacaggccttccttatcaagtaagctcatttgccttttccatgatccagcttcttggaattatagccgtgatg |
14238930 |
T |
|
| Q |
601 |
tctcaggttgcatggcaagtcttcattgtctttatacccatgatagcaattagcatttggtatcaggtaatgtttggaccaccaaggctttaccatcaca |
700 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | |||| | | |||||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
14238929 |
tctcaggttgcatggcaagttttcattgtctttatacccgtaatagtagtcagcatttggtatcaggtattatttggaccatcaaggctttaccatcaca |
14238830 |
T |
|
| Q |
701 |
gattatat |
708 |
Q |
| |
|
|||||||| |
|
|
| T |
14238829 |
gattatat |
14238822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 14373825 - 14374093
Alignment:
| Q |
10 |
ttttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattggaa |
109 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
14373825 |
ttttcggtgtattggaagtatatcacaactgcatatggaggatctgtcgtaccattcatattattggcctatattctttttcaagctcttcaaattggaa |
14373924 |
T |
|
| Q |
110 |
gcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccattgg |
209 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| || || ||||||||||||||||| || ||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
14373925 |
gcaactactggatggcgtgggcaactcccatctcagcagatgtggagccacctgttgaagggacgactcttattgaagtctatgttggtttggcctttgc |
14374024 |
T |
|
| Q |
210 |
aagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatact |
278 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
14374025 |
aagttctatatgcattcttgttagatctatgttacttgttacagttggttgtaagacagctactatact |
14374093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 465 - 712
Target Start/End: Original strand, 14375067 - 14375314
Alignment:
| Q |
465 |
ttttttcatctctttattcatctatgctgtcttccaggcttctactgatcaacgtgcagtggataccgacattccttatcaaattggctcatttgccttc |
564 |
Q |
| |
|
|||||| ||| |||| ||| ||| || |||||| |||||||||||||| ||| | ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
14375067 |
tttttttatcgctttcttcctctttgttgtcttgcaggcttctactgaccaaagagcagtggatacagacattcctgataaaattggcacatttgccttt |
14375166 |
T |
|
| Q |
565 |
ttcatgatccagcttctcggaattatagcagtgatgtctcaggttgcatggcaagtcttcattgtctttatacccatgatagcaattagcatttggtatc |
664 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || ||| |||||||||||||| | ||||||||||||| |
|
|
| T |
14375167 |
tctatgatccagcttctgggaattatagcagttatgtctcaggttgcatggcaagttttcatcgtatttttacccatgatagcagtcagcatttggtatc |
14375266 |
T |
|
| Q |
665 |
aggtaatgtttggaccaccaaggctttaccatcacagattatatacca |
712 |
Q |
| |
|
||||| | ||||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
14375267 |
aggtattatttggaccatcaaggcattaacatcacagattatatacca |
14375314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 14374918 - 14375015
Alignment:
| Q |
273 |
tatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtcata |
370 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || ||||| |||| ||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
14374918 |
tatactcttcaaaaaaatgcacttgtgtatctttcgcgcccccatgtcatttttcgattctactccaagtggacggatccttaatagagtatgtcata |
14375015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 737 - 773
Target Start/End: Complemental strand, 41436646 - 41436610
Alignment:
| Q |
737 |
gcaaatttgactctattctatacttgtaatctgcagc |
773 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41436646 |
gcaaatttgactccattctatacttgtaatctgcagc |
41436610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 737 - 773
Target Start/End: Complemental strand, 41449859 - 41449823
Alignment:
| Q |
737 |
gcaaatttgactctattctatacttgtaatctgcagc |
773 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41449859 |
gcaaatttgactccattctatacttgtaatctgcagc |
41449823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 494 - 670
Target Start/End: Complemental strand, 22748614 - 22748438
Alignment:
| Q |
494 |
tcttccaggcttctactgatcaacgtgcagtggataccgacattccttatcaaattggctcatttgccttcttcatgatccagcttctcggaattatagc |
593 |
Q |
| |
|
|||| |||||||||||||| ||| ||| ||||||||| ||||||| ||||| || | || ||| | || ||| ||||| || | ||||||||| |
|
|
| T |
22748614 |
tcttgcaggcttctactgaccaaagtgaagtggatacaagtattccttttcaaactgcattatgtgcttgctccataatccatctcgttggaattataat |
22748515 |
T |
|
| Q |
594 |
agtgatgtctcaggttgcatggcaagtcttcattgtctttatacccatgatagcaattagcatttggtatcaggtaa |
670 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| || |||| |||||| ||||||||||||||||||| |
|
|
| T |
22748514 |
ggtgatgtctcaggttgcatggcaggttttcattgtctttattcctatgacagcaatcagcatttggtatcaggtaa |
22748438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 366
Target Start/End: Complemental strand, 22749442 - 22749172
Alignment:
| Q |
96 |
tcttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||| |||||| || || | | ||||||| |
|
|
| T |
22749442 |
tcttcaaattggaagcaactattggatggcttcttcaactcccatctcaaaagatatggagccacctgttggaggaactacactcctagttgtctatgta |
22749343 |
T |
|
| Q |
196 |
ggttttgccattggaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcact |
295 |
Q |
| |
|
|||| ||||| |||||||||||||| | || ||||||| | || || | ||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
22749342 |
tgtttggccataggaagttctttatgtgtcctatctagagcaacacttgttgtcaccgctggttataaaacagctactctactcttcaacaaaatgcatc |
22749243 |
T |
|
| Q |
296 |
tgtgcattttccgtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgt |
366 |
Q |
| |
|
| |||||||| || || || |||| ||||||||| | ||||||||||| ||||||||||||| |||||| |
|
|
| T |
22749242 |
tctgcatttttcgcgctccaatgtctttttttgatgccactccaagtggaagaatccttaatagggtatgt |
22749172 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 22741911 - 22741966
Alignment:
| Q |
313 |
ccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtca |
368 |
Q |
| |
|
||||||| |||||||||| | || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
22741911 |
ccgatgtcgttttttgatgcgacaccaagtggacgaattcttaatagagtatgtca |
22741966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 258 - 370
Target Start/End: Complemental strand, 32119505 - 32119393
Alignment:
| Q |
258 |
ttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttttgattctactccaagtggtcgaatccttaat |
357 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| | ||| || || ||||| | | ||||| |||||||||||||||| | ||| ||||| |
|
|
| T |
32119505 |
ttataagacagctcctatactcttcaagaaaatgcacttttacatctttcgcgcccccgtataatttttcaattctactccaagtggacagatctttaat |
32119406 |
T |
|
| Q |
358 |
agagtatgtcata |
370 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32119405 |
agagtatgtcata |
32119393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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