View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2210-Insertion-6 (Length: 731)

Name: NF2210-Insertion-6
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2210-Insertion-6
NF2210-Insertion-6
[»] chr1 (9 HSPs)
chr1 (19-651)||(34247873-34248529)
chr1 (251-392)||(23809871-23810013)
chr1 (461-566)||(34257224-34257329)
chr1 (265-386)||(39467029-39467149)
chr1 (317-385)||(236575-236643)
chr1 (265-391)||(270324-270450)
chr1 (251-304)||(5282728-5282784)
chr1 (345-391)||(8050481-8050527)
chr1 (256-297)||(16491598-16491639)
[»] chr5 (5 HSPs)
chr5 (251-386)||(37067706-37067839)
chr5 (265-391)||(12878121-12878246)
chr5 (248-303)||(28489273-28489330)
chr5 (251-386)||(43150145-43150281)
chr5 (251-303)||(36034604-36034656)
[»] chr7 (5 HSPs)
chr7 (251-391)||(47086287-47086429)
chr7 (256-305)||(42653157-42653206)
chr7 (256-391)||(9379991-9380125)
chr7 (261-358)||(3043813-3043912)
chr7 (256-297)||(24382686-24382727)
[»] chr4 (11 HSPs)
chr4 (255-391)||(31375113-31375250)
chr4 (251-391)||(5060399-5060538)
chr4 (315-386)||(13849360-13849431)
chr4 (316-391)||(36752359-36752433)
chr4 (317-391)||(35273361-35273435)
chr4 (261-305)||(42550419-42550463)
chr4 (347-386)||(22717102-22717141)
chr4 (347-386)||(22988076-22988115)
chr4 (255-305)||(13218284-13218334)
chr4 (251-303)||(4902010-4902063)
chr4 (345-386)||(50981781-50981822)
[»] chr8 (9 HSPs)
chr8 (317-391)||(5704683-5704756)
chr8 (265-309)||(2527283-2527327)
chr8 (318-386)||(36442743-36442811)
chr8 (320-383)||(25899240-25899303)
chr8 (261-303)||(5895792-5895834)
chr8 (251-297)||(10617879-10617925)
chr8 (345-391)||(24242668-24242714)
chr8 (345-391)||(27849825-27849871)
chr8 (265-386)||(10096617-10096739)
[»] chr3 (4 HSPs)
chr3 (249-391)||(10071499-10071645)
chr3 (345-383)||(47665293-47665331)
chr3 (319-386)||(7251596-7251663)
chr3 (249-303)||(34481777-34481831)
[»] chr6 (3 HSPs)
chr6 (340-389)||(9297758-9297807)
chr6 (316-388)||(17546039-17546110)
chr6 (345-387)||(2746453-2746494)
[»] chr2 (5 HSPs)
chr2 (317-378)||(37198786-37198846)
chr2 (347-391)||(30854820-30854864)
chr2 (316-386)||(37103326-37103396)
chr2 (346-391)||(433138-433182)
chr2 (265-310)||(13774544-13774589)
[»] scaffold0882 (1 HSPs)
scaffold0882 (250-303)||(3683-3736)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 34248529 - 34247873
Alignment:
Q  19 taatgtttgtggggttggacaatggacacccttatattacttcactcttcttcatgacatgcattaggttcttgtgaagctatcccattacactatggga 118  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34248529 taatgtttgtggggttggacaatggacacc---atattacttcactcttcttcatggcatgcattaggttcttgtgaagctatcccattacactatggga 34248433  T
Q  119 catgtgcatctt------gaagctaa--------agaaaagaagttgttgatttatatctttttggtttgagtttggatcctttcatttttcaaaagaag 204  Q
    ||||||||||||      |||||||         |  |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  34248432 catgtgcatcttctaaatgaagctatcccattacactaaagaagttgttgatttat--ctttttggtttgagtttggatcctttcatttttcaaaagaag 34248335  T
Q  205 tttaagagccacgtttagattagagtagtgataacttgctatcaaattttattttatttttagataggcgaaatgggaaagtcattataaacttacacat 304  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||     
T  34248334 tttaagagccacatttagattagagtagtgataacttgctatcaaattttattttatttttagataggcggaatggaaaagtcattataaacttacacac 34248235  T
Q  305 aagtgaggaagtcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggacttgtggacacttggtatcaa 404  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34248234 aagtgaggaagtcggggttcaaactctggtcatgccgtctggcctaataatttcgacaattttgtcggttgagttaggacttctggacacttggtatcaa 34248135  T
Q  405 aatattaaccatataattgacaccatatgtgttcacggaatatatatgccgaacaataatttttatcaa---tttttnnnnnnnntgtttagattatata 501  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||   |||||        ||||| |||||||||    
T  34248134 aatattaaccatataattgacatcatatgtgttcacgaaatatatatgccgaacaataatttttataaaatttttttaaaaaaaatgtttggattatata 34248035  T
Q  502 aaggggtattttctgaaagaaatatgagtttatgtaattaatcaattataatactttgattaagagctcattt------gttataacttattatt----- 590  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||         
T  34248034 aaagggtattttctaaaagaaatatgagtttatgtaattaatcaattataatactttgattaagagctcatttgttatagttataacttattattaaaaa 34247935  T
Q  591 -nnnnnnnntcatttttgaagaacattaatcattttaagagtattgcatctatttattatag 651  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34247934 aaaaaaaaaacatttttgaagaacattaatcattttaagagtattgcatctatttattatag 34247873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 23809871 - 23810013
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaacttacaca--taagtg-aggaagtcggggttcaaactccgatcatcccgtctggc 347  Q
    |||| |||| |||||| |||| | |||||  |||||||||||||||| |||||  |||||| ||| | |||| |||| ||||||||||||  | || |||    
T  23809871 tttttttttttttttaaatagacaaaatgacaaagtcattataaactcacacacataagtggaggta-tcggagttcgaactccgatcatgacatccggc 23809969  T
Q  348 ctaacaatttcgacaattttgtcggttgagttaggacttgtggac 392  Q
    |||||||||||||  |||||||| ||||| ||||||||| |||||    
T  23809970 ctaacaatttcga-tattttgtctgttgaattaggacttctggac 23810013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 566
Target Start/End: Complemental strand, 34257329 - 34257224
Alignment:
Q  461 taatttttatcaatttttnnnnnnnntgtttagattatataaaggggtattttctgaaagaaatatgagtttatgtaattaatcaattataatactttga 560  Q
    ||||||||||||||||||        ||||||||| ||||||| | ||||||||| ||||| | | |||||| | | ||||||||| |||| ||||||||    
T  34257329 taatttttatcaatttttttaaaatttgtttagataatataaaagagtattttctaaaagagagacgagtttgtatcattaatcaaatatagtactttga 34257230  T
Q  561 ttaaga 566  Q
    ||||||    
T  34257229 ttaaga 34257224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 39467149 - 39467029
Alignment:
Q  265 tagataggcgaaatgggaaagtcattataaacttacacataagtgaggaagtcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaat 364  Q
    ||||||| |||||||| |||  ||||||||||||||||| |||||| |    |||||||| ||| ||||||||  | ||||||||||||||||  || ||    
T  39467149 tagatagacgaaatggaaaaaccattataaacttacacacaagtgaaggtaccggggttcgaaccccgatcatagcatctggcctaacaattt-taccat 39467051  T
Q  365 tttgtcggttgagttaggactt 386  Q
    |||| | |||||| ||||||||    
T  39467050 tttgccagttgagctaggactt 39467029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 236643 - 236575
Alignment:
Q  317 cggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggact 385  Q
    |||||||| ||| ||| ||||  |||| |||||||||||||||||| ||||||| |||||| |||||||    
T  236643 cggggttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttgaggtaggact 236575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 270324 - 270450
Alignment:
Q  265 tagataggcgaaatgggaaagtcattataaacttacacataagtg-aggaagtcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaa 363  Q
    ||||||| |||||||| |||| ||||||||||| ||||| ||||| ||| |  |||||||| ||| ||| ||||  | || ||||||||||||||| ||     
T  270324 tagatagacgaaatggcaaagccattataaactcacacacaagtggaggtac-cggggttcgaaccccggtcatggcatccggcctaacaatttcggcat 270422  T
Q  364 ttttgtcggttgagttaggacttgtgga 391  Q
    ||||| | |||||| |||||||| ||||    
T  270423 ttttgccagttgagctaggacttctgga 270450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 5282784 - 5282728
Alignment:
Q  251 ttttattttattttt---agataggcgaaatgggaaagtcattataaacttacacat 304  Q
    |||||||||||||||   |||||| |||||| | |||||||||||||||||||||||    
T  5282784 ttttattttattttttatagatagacgaaattgtaaagtcattataaacttacacat 5282728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 8050527 - 8050481
Alignment:
Q  345 ggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    |||||||||||||||||| |||||||||||||| || ||||| ||||    
T  8050527 ggcctaacaatttcgacatttttgtcggttgagctaagacttatgga 8050481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 16491598 - 16491639
Alignment:
Q  256 ttttatttttagataggcgaaatgggaaagtcattataaact 297  Q
    |||| ||||||||||| |||||||| ||||||||||||||||    
T  16491598 ttttttttttagatagacgaaatggtaaagtcattataaact 16491639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 386
Target Start/End: Complemental strand, 37067839 - 37067706
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaacttacacataagt-gaggaagtcggggttcaaactccgatcatcccgtctggcct 349  Q
    |||| |||| ||| ||||||| |||||||| |||||||||||||||| ||||| |||| |||| |  |||||||| ||||||| ||||  | || |||||    
T  37067839 tttttttttttttgtagatagacgaaatggcaaagtcattataaactcacacacaagtggaggta--cggggttcgaactccggtcatggcatccggcct 37067742  T
Q  350 aacaatttcgacaattttgtcggttgagttaggactt 386  Q
    |||||||||| | |||||||| |||||| ||||||||    
T  37067741 aacaatttcggc-attttgtcagttgaggtaggactt 37067706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 12878121 - 12878246
Alignment:
Q  265 tagataggcgaaatgggaaagtcattataaacttacacataagt-gaggaagtcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaa 363  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||| |||| | ||||||||| |||| |||||||  | || ||||||||||||||| | |    
T  12878121 tagatagacgaaatggcaaagccattataaactcacacacaagtggaggta-tcggggttcgaacttcgatcatgacatccggcctaacaatttcggc-a 12878218  T
Q  364 ttttgtcggttgagttaggacttgtgga 391  Q
    ||||| | |||||| |||||||| ||||    
T  12878219 ttttgccagttgagctaggacttctgga 12878246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 28489330 - 28489273
Alignment:
Q  248 aaattttattttatttt--tagataggcgaaatgggaaagtcattataaacttacaca 303  Q
    |||||||||||||||||  ||||||| |||||||| |||||||||||||||| |||||    
T  28489330 aaattttattttattttggtagatagacgaaatggcaaagtcattataaactcacaca 28489273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 386
Target Start/End: Original strand, 43150145 - 43150281
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaacttacacataagtgaggaagt--cggggttcaaactccgatcatcccgtctggcc 348  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||||| ||||| |   | ||| ||  |||||||| ||| || |||||  | || ||||    
T  43150145 tttttttttttttttagatagacgaaatggtaaagtcattataaactcacacacacaagtggaggtaccggggttcgaaccccaatcatagcatccggcc 43150244  T
Q  349 taacaatttcgacaattttgtcggttgagttaggactt 386  Q
    ||||||||||| | |||||| | |||||||||||||||    
T  43150245 taacaatttcg-ccattttgccagttgagttaggactt 43150281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 36034604 - 36034656
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaacttacaca 303  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||||| |||||    
T  36034604 tttttttttttttttagatagacgaaatggtaaagtcattataaactcacaca 36034656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 47086287 - 47086429
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaacttacaca--taagtg-aggaagtcggggttcaaactccgatcatcccgtctggc 347  Q
    |||| |||| ||||||||||| |||||||| |||| ||||||||||| |||||  |||||| ||| |  | |||||| ||| ||||||||  | || |||    
T  47086287 tttttttttttttttagatagacgaaatggtaaagccattataaactcacacacataagtggaggtaa-cagggttcgaaccccgatcatggcatccggc 47086385  T
Q  348 ctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||||||||| ||||||| |||||| |||||||| ||||    
T  47086386 ctaacaatttcgacatttttgtcagttgagctaggacttatgga 47086429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 42653157 - 42653206
Alignment:
Q  256 ttttatttttagataggcgaaatgggaaagtcattataaacttacacata 305  Q
    |||| ||||||||||| |||||||| |||| |||||||||||||||||||    
T  42653157 ttttttttttagatagacgaaatggcaaagccattataaacttacacata 42653206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 391
Target Start/End: Complemental strand, 9380125 - 9379991
Alignment:
Q  256 ttttatttttagataggcgaaatgggaaagtcattataaacttacacataagtg-aggaagtcggggttcaaactccgatcatcccgtctggcctaacaa 354  Q
    |||| ||||||||||| |||||||| |||| ||||||||| | ||||| ||||| ||| | | ||||||| ||| ||| ||||  | || ||||||||||    
T  9380125 ttttttttttagatagacgaaatggcaaagccattataaattcacacacaagtggaggtact-ggggttcgaaccccggtcatgacatccggcctaacaa 9380027  T
Q  355 tttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||| |||||| | |||||| |||||||| ||||    
T  9380026 tttcgac-attttgccagttgagctaggacttctgga 9379991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 3043813 - 3043912
Alignment:
Q  261 tttttagataggcgaaatgggaaagtcattataaacttacaca--taagtg-aggaagtcggggttcaaactccgatcatcccgtctggcctaacaattt 357  Q
    ||||||||||| |||||| | |||||||||||||||| |||||  |||||| ||| | ||||||||| |||||| |||||  | || |||||||||||||    
T  3043813 tttttagatagacgaaattgcaaagtcattataaactcacacacataagtggaggta-tcggggttcgaactccaatcatgacatccggcctaacaattt 3043911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 24382727 - 24382686
Alignment:
Q  256 ttttatttttagataggcgaaatgggaaagtcattataaact 297  Q
    |||| ||||||||||| |||||||| ||||||||||||||||    
T  24382727 ttttttttttagatagacgaaatggaaaagtcattataaact 24382686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 391
Target Start/End: Complemental strand, 31375250 - 31375113
Alignment:
Q  255 attttatttttagataggcgaaatgggaaagtcattataaacttacacataagtgaggaagt--cggggttcaaactccgatcatcccgtctggcctaac 352  Q
    ||||| ||||||||||| |||||||  |||||||||||||||||||||| |   | ||| ||  |||||||| ||| ||| ||||  | ||||||||||     
T  31375250 attttttttttagatagacgaaatgacaaagtcattataaacttacacacacaagtggaggtaccggggttcgaaccccggtcatggcatctggcctaat 31375151  T
Q  353 aatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||| |||||| | ||||||||||||||| ||||    
T  31375150 aatttcgac-attttggcagttgagttaggacttctgga 31375113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 5060399 - 5060538
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaacttacacataagtgaggaagtcggggttcaaactccgatcatcccgtctggccta 350  Q
    |||| |||| ||| |||||||  ||||||  ||||| |||||||||| |||||||||||| |   ||||||||| ||| ||||||||    || || |||    
T  5060399 tttttttttttttatagatagatgaaatgacaaagttattataaactcacacataagtgaaggtatcggggttcgaacgccgatcatgatatccggacta 5060498  T
Q  351 acaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||||| ||||| || ||||||||||||||| ||||    
T  5060499 acaatttcgac-attttatcagttgagttaggacttctgga 5060538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 13849431 - 13849360
Alignment:
Q  315 gtcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    |||||||||| ||| |||||||   |||||| |||||||||||||||| ||||||| |||||| ||||||||    
T  13849431 gtcggggttcgaaccccgatcaagacgtctgacctaacaatttcgacatttttgtcagttgagctaggactt 13849360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 36752433 - 36752359
Alignment:
Q  316 tcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||| ||| ||||||||  | |||||||||||||||||| | |||||||| ||||||||||||||| ||||    
T  36752433 tcggggttcgaaccccgatcatgacatctggcctaacaatttcggc-attttgtcagttgagttaggacttctgga 36752359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 35273361 - 35273435
Alignment:
Q  317 cggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    |||| ||||||||||||||||  | |  |||||||||||||||||| ||||| | |||||| |||||||||||||    
T  35273361 cgggattcaaactccgatcatggcatacggcctaacaatttcgacatttttgccagttgagctaggacttgtgga 35273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 42550419 - 42550463
Alignment:
Q  261 tttttagataggcgaaatgggaaagtcattataaacttacacata 305  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  42550419 tttttagatagacgaaatggcaaagccattataaacttacacata 42550463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 22717141 - 22717102
Alignment:
Q  347 cctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  22717141 cctaacaatttcgacatttttgtcggttgagttaagactt 22717102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 22988076 - 22988115
Alignment:
Q  347 cctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  22988076 cctaacaatttcgacatttttgtcggttgagttaagactt 22988115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 13218334 - 13218284
Alignment:
Q  255 attttatttttagataggcgaaatgggaaagtcattataaacttacacata 305  Q
    ||||| ||||||||||| |||||||| ||| |||||||||||| |||||||    
T  13218334 attttttttttagatagacgaaatggcaaaatcattataaactcacacata 13218284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 4902063 - 4902010
Alignment:
Q  251 ttttattttatttt-tagataggcgaaatgggaaagtcattataaacttacaca 303  Q
    ||||||||| |||| ||||||| ||||||||||||  |||||||||||||||||    
T  4902063 ttttatttttttttatagatagacgaaatgggaaaaccattataaacttacaca 4902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 50981781 - 50981822
Alignment:
Q  345 ggcctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    ||||||||||||||| || ||||||| |||||||||||||||    
T  50981781 ggcctaacaatttcggcatttttgtcagttgagttaggactt 50981822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 5704683 - 5704756
Alignment:
Q  317 cggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    |||||||||||| ||| ||||  | |||||||||||||||||||| |||||||| |||||| |||||||||||||    
T  5704683 cggggttcaaaccccggtcatggcatctggcctaacaatttcgac-attttgtcagttgagctaggacttgtgga 5704756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 2527327 - 2527283
Alignment:
Q  265 tagataggcgaaatgggaaagtcattataaacttacacataagtg 309  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||    
T  2527327 tagatagacgaaatggtaaagtcattataaactcacacataagtg 2527283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 36442743 - 36442811
Alignment:
Q  318 ggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    ||||||||| ||||| ||||  |||| ||||||||||||||| || |||| || |||||||||||||||    
T  36442743 ggggttcaatctccggtcatgacgtccggcctaacaatttcggcatttttatcagttgagttaggactt 36442811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 25899240 - 25899303
Alignment:
Q  320 ggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttagga 383  Q
    ||||||||| ||| ||||  |||| ||||||||||||||| || ||||||| ||||||||||||    
T  25899240 ggttcaaaccccggtcatgacgtccggcctaacaatttcggcatttttgtcagttgagttagga 25899303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 5895792 - 5895834
Alignment:
Q  261 tttttagataggcgaaatgggaaagtcattataaacttacaca 303  Q
    ||||||||||| |||||||| |||||||||||||||| |||||    
T  5895792 tttttagatagacgaaatggtaaagtcattataaactcacaca 5895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 10617925 - 10617879
Alignment:
Q  251 ttttattttatttttagataggcgaaatgggaaagtcattataaact 297  Q
    |||| |||| ||||||||||| |||||||| ||||||||||||||||    
T  10617925 tttttttttttttttagatagacgaaatggcaaagtcattataaact 10617879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 24242668 - 24242714
Alignment:
Q  345 ggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||||||||| || ||||| ||||||||||||||||| ||||    
T  24242668 ggcctaacaatttcggcatttttgccggttgagttaggacttctgga 24242714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 27849825 - 27849871
Alignment:
Q  345 ggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||||||||| || ||||||| ||||||||||||||| ||||    
T  27849825 ggcctaacaatttcggcatttttgtcagttgagttaggacttctgga 27849871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 10096739 - 10096617
Alignment:
Q  265 tagataggcgaaatgggaaagtcattataaacttacaca--taagtg-aggaagtcggggttcaaactccgatcatcccgtctggcctaacaatttcgac 361  Q
    ||||||| |||||||| |||| ||||||||||| |||||  |||||| ||| | ||||||||| ||| ||| ||||  | || |||||||||||||||||    
T  10096739 tagatagacgaaatggcaaagccattataaactcacacacataagtggaggta-tcggggttcgaaccccggtcatggcatccggcctaacaatttcgac 10096641  T
Q  362 aattttgtcggttgagttaggactt 386  Q
     |||||| | |||||| ||||||||    
T  10096640 -attttgccagttgagctaggactt 10096617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 391
Target Start/End: Original strand, 10071499 - 10071645
Alignment:
Q  249 aattttattttattttta--gataggcgaaatgggaaagtcattataaacttacac--ataagtgaggaagtcggggttcaaactccgatcatcccgtct 344  Q
    ||||||||||||||||||  ||||| |||||||| |||| ||||||||||| ||||  | |||||  |  || ||||||| ||| |||| |||  | ||     
T  10071499 aattttattttatttttatagatagacgaaatggcaaagccattataaactcacacgcacaagtgcaggtgttggggttcgaaccccgaccatggcatcc 10071598  T
Q  345 ggcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
     |||||||||||| |||| ||||||| |||||| |||||||||||||    
T  10071599 agcctaacaattttgacatttttgtcagttgagctaggacttgtgga 10071645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 47665293 - 47665331
Alignment:
Q  345 ggcctaacaatttcgacaattttgtcggttgagttagga 383  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  47665293 ggcctaacaatttcgacatttttgtcggttgagttagga 47665331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 7251596 - 7251663
Alignment:
Q  319 gggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    |||||||||| | | ||||  ||||| |||||||||||||| || ||||||| |||||||||||||||    
T  7251596 gggttcaaaccctggtcatgacgtctagcctaacaatttcggcatttttgtcagttgagttaggactt 7251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 34481777 - 34481831
Alignment:
Q  249 aattttattttatttttagataggcgaaatgggaaagtcattataaacttacaca 303  Q
    |||||| |||| ||||||||||| |||||||| |||| ||||||||||| |||||    
T  34481777 aatttttttttttttttagatagacgaaatggcaaagccattataaactcacaca 34481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 9297807 - 9297758
Alignment:
Q  340 cgtctggcctaacaatttcgacaattttgtcggttgagttaggacttgtg 389  Q
    ||||||||||||||||||||||| ||||||| |||||  |||||||||||    
T  9297807 cgtctggcctaacaatttcgacatttttgtcagttgaactaggacttgtg 9297758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 17546110 - 17546039
Alignment:
Q  316 tcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggacttgt 388  Q
    ||||||||||||||||||||||  | || | ||||||||||||||| ||||||||  ||||| ||||||||||    
T  17546110 tcggggttcaaactccgatcatgacatccgacctaacaatttcgac-attttgtcaattgagctaggacttgt 17546039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 2746494 - 2746453
Alignment:
Q  345 ggcctaacaatttcgacaattttgtcggttgagttaggacttg 387  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  2746494 ggcctaacaatttcgaca-ttttgtcggttgagataggacttg 2746453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 37198786 - 37198846
Alignment:
Q  317 cggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagt 378  Q
    |||||||| ||| |||||||| || |||||||||||||||||||| |||||||| |||||||    
T  37198786 cggggttcgaaccccgatcatgccatctggcctaacaatttcgac-attttgtcagttgagt 37198846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 30854820 - 30854864
Alignment:
Q  347 cctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    |||||||||||||||| |||| || ||||||||||||||||||||    
T  30854820 cctaacaatttcgacatttttatcagttgagttaggacttgtgga 30854864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 37103396 - 37103326
Alignment:
Q  316 tcggggttcaaactccgatcatcccgtctggcctaacaatttcgacaattttgtcggttgagttaggactt 386  Q
    ||||||||||||| ||| ||||   ||| || ||||||||||||||| ||||||| |||||| ||||||||    
T  37103396 tcggggttcaaaccccggtcatgatgtccggtctaacaatttcgacatttttgtcagttgagctaggactt 37103326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 433182 - 433138
Alignment:
Q  346 gcctaacaatttcgacaattttgtcggttgagttaggacttgtgga 391  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  433182 gcctaacaatttcgaca-ttttgtcagttgagttaggacttctgga 433138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 13774589 - 13774544
Alignment:
Q  265 tagataggcgaaatgggaaagtcattataaacttacacataagtga 310  Q
    ||||||| ||||||||||||| ||||||||||| ||||| ||||||    
T  13774589 tagatagacgaaatgggaaagccattataaactcacacacaagtga 13774544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 3683 - 3736
Alignment:
Q  250 attttattttatttttagataggcgaaatgggaaagtcattataaacttacaca 303  Q
    ||||| |||| ||| ||||||| |||||||| |||||||||||||||| |||||    
T  3683 atttttttttttttatagatagacgaaatggcaaagtcattataaactcacaca 3736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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