View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2210-Insertion-9 (Length: 690)

Name: NF2210-Insertion-9
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2210-Insertion-9
NF2210-Insertion-9
[»] chr4 (1 HSPs)
chr4 (8-690)||(28229325-28230007)


Alignment Details
Target: chr4 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Complemental strand, 28230007 - 28229325
Alignment:
Q  8 cattttgtgtctgtgccttattttctatcttgagagtgaggagaatttagtgaatcccgattgacattcatgttttagtagtgattgttcaggtctcttg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28230007 cattgtgtgtctgtgccttattttctatcttgagagtgaggagaatttagtgaatcccgattgacattcatggtttagtagtgattgttcaggtctcttg 28229908  T
Q  108 catttgcaatgattaattatttttgtttcgtcatttggaaactctttgacagattaagatattattttctgttataatctcactattaatatacttcctg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28229907 catttgcaatgattaattatttttgtttcgtcatttggaaactcttcgacagattaagatattattttctgttatattctcactattaatatacttcctg 28229808  T
Q  208 actttgcgtatggtgataccctattacagaagtttcatgaaaaataattgggaagaaagaagttcaagaaatgtaacaagaaacagtcaacatttgcagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28229807 actttgcgtatggtgataccctattacagaagtttcatgaaaaataattgggaagaaagaagttcaagaaatgtaacaagaaacagtcaacatttgcagt 28229708  T
Q  308 atcgcgagtacatgccttctgtctggcaggtaaagattttgtcactattactctgttaacattcaaaaacatgtgtaattcaaagaccaactctcataaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28229707 atcgcgagtacatgccttctgtctggcaggtaaagattttgtcactattactctggtaacattcaaaaacatgtgtaattcaaagaccaactctcataaa 28229608  T
Q  408 atcttaatttgtttgggtgaggtccaaaaatggtattatatctgaatatttatagaaagtggatggacattaggcagtagtggaagtagagattagagaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28229607 atcttaatttgtttgggtgaggtccaaaaatggtattatatctgaatatttatagaaagtggatggacattaggcagtagtggaagtagagattagagaa 28229508  T
Q  508 gaggttagagaagtggagaatgtgaaagtaacgatctgaaaattttctctaatatttataaaattaagttaatacctgttattaatttgcagaaaaacat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28229507 gaggttagagaagtggagaatgtgaaagtaacgatctgaaaattttctctaatatttataaaattaagttaatacctgttattaatttgcagaaaaacat 28229408  T
Q  608 gcgttgtaaatcgaaggtctttaggaacatgttttggcaaaatttcatcatgaaacctcgcacattggtataagccatcttta 690  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28229407 gtgttgtaaatcgaaggtctttaggaacatgttttggcaaaatttcatcatgaaacctcgcacattgttataagccatcttta 28229325  T

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