View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2210R-Insertion-12 (Length: 565)

Name: NF2210R-Insertion-12
Description: NF2210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2210R-Insertion-12
NF2210R-Insertion-12
[»] chr1 (8 HSPs)
chr1 (9-382)||(32555733-32556098)
chr1 (405-565)||(32555576-32555736)
chr1 (144-242)||(16923093-16923191)
chr1 (384-431)||(21516260-21516307)
chr1 (370-431)||(5923377-5923438)
chr1 (387-432)||(24153163-24153208)
chr1 (387-431)||(37236-37280)
chr1 (395-431)||(15514937-15514973)
[»] chr7 (4 HSPs)
chr7 (400-431)||(22388576-22388607)
chr7 (399-431)||(2380230-2380262)
chr7 (398-430)||(3501115-3501147)
chr7 (399-431)||(22388055-22388087)
[»] chr4 (5 HSPs)
chr4 (370-433)||(11262875-11262938)
chr4 (370-431)||(942198-942259)
chr4 (382-431)||(43932320-43932369)
chr4 (399-431)||(5624771-5624803)
chr4 (399-431)||(29563547-29563579)
[»] chr5 (3 HSPs)
chr5 (397-431)||(14959618-14959652)
chr5 (397-438)||(11911794-11911835)
chr5 (371-431)||(36542404-36542464)
[»] chr8 (2 HSPs)
chr8 (399-432)||(34563136-34563169)
chr8 (387-431)||(7008516-7008560)
[»] chr3 (1 HSPs)
chr3 (382-431)||(48933718-48933767)
[»] chr2 (1 HSPs)
chr2 (370-431)||(32634231-32634292)
[»] scaffold0072 (1 HSPs)
scaffold0072 (382-426)||(4864-4908)
[»] chr6 (1 HSPs)
chr6 (379-431)||(396524-396576)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 382
Target Start/End: Complemental strand, 32556098 - 32555733
Alignment:
Q  9 attaggaccccaattattcagcttccaaatccgtcaaacccaaatttataggagaaatctggagtggaacaggcccatgcaaaaatctatataagctaag 108  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32556098 attaggaccccaattattcagcttccacatccatctaacccaaatttataggagaaatctggagtggaacaggcccatgcaaaaatctatataagctaag 32555999  T
Q  109 taatataagtatactatactaatcaaactattgaatcaaatccatgattgaatggaatagttgcatttgaaggagttcactccactgatatgagcaaata 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32555998 taatataagtatactatactgatcaaactattgaatcaaatccatgattgaatggaataattgcatttgaaggagttcactccactgatatgagcaaata 32555899  T
Q  209 tatctgaggaatcaaccatatcatcttcctctttcacaactacctgtagttacagttatcaaataaagcatgattaaaaattattccgatcaaataagta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||      
T  32555898 tatctgaggaatcaaccatatcatcttcctctttcacaactacctgtagttacagttatcaaatgaagcaggattaaaaattattccaatcaaataag-- 32555801  T
Q  309 gacaagtagataagttcaaatatttcaatctcgggcgcttataacataaatgtattttttattatacatatata 382  Q
          |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32555800 ------tagataagttcaaatagttcaatctcgagcgcttataacataaatgtatcttttattatacatatata 32555733  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 405 - 565
Target Start/End: Complemental strand, 32555736 - 32555576
Alignment:
Q  405 tataagcgtttaattaagttgtttatctgaatagtgcattagccaagttaaatatgaacttgtaaagtgtgttggtatgtgtttaataattgaatgttgt 504  Q
    |||||| | ||||||||||||||||||  || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32555736 tataagtgcttaattaagttgtttatccaaacagcgcattagccaagttaaatatgaacttgtaaagtgttttggtatgtgtttaataattgaatgttgt 32555637  T
Q  505 ttgagattaatcttatacctcttcttcatcttcttcttcatgattgccactagcagttcta 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32555636 ttgagattaatcttatacctcttcttcatcttcttcttcatgattgccactagcagttcta 32555576  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 16923191 - 16923093
Alignment:
Q  144 tcaaatccatgattgaatggaatagttgcatttgaaggagttcactccactgatatgagcaaatatatctgaggaatcaaccatatcatcttcctcttt 242  Q
    ||||||| |||| || |||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  16923191 tcaaatcaatgagtggatggaatagttgcatttgaaggagttaagtccactgatatgtgcaaagatatctgaggaatcaaccatatcatcttcttcttt 16923093  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 21516307 - 21516260
Alignment:
Q  384 ttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    |||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  21516307 ttgtatcataaacatttatgttataagcgtttaattaagttgtttatc 21516260  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 5923438 - 5923377
Alignment:
Q  370 ttatacatatatacttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    |||| |||| || |||||||||||  | |||||| ||||||||| |||||||||||||||||    
T  5923438 ttatccataaatccttgtatgataagcccttatgctataagcgtataattaagttgtttatc 5923377  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 24153208 - 24153163
Alignment:
Q  387 tatgatagacacttatgttataagcgtttaattaagttgtttatct 432  Q
    ||||||| |||  ||||||||||| |||||||||||||||||||||    
T  24153208 tatgataaacatatatgttataagtgtttaattaagttgtttatct 24153163  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 37280 - 37236
Alignment:
Q  387 tatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  37280 tatgataaacatttatgttataagcatttaattaagctgtttatc 37236  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 15514973 - 15514937
Alignment:
Q  395 acacttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  15514973 acacttatggtataagcgcttaattaagttgtttatc 15514937  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 431
Target Start/End: Original strand, 22388576 - 22388607
Alignment:
Q  400 tatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||||||||||||||||||||||||||||    
T  22388576 tatgttataagcgtttaattaagttgtttatc 22388607  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 2380262 - 2380230
Alignment:
Q  399 ttatgttataagcgtttaattaagttgtttatc 431  Q
    |||||||||||||| ||||||||||||||||||    
T  2380262 ttatgttataagcgcttaattaagttgtttatc 2380230  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 3501115 - 3501147
Alignment:
Q  398 cttatgttataagcgtttaattaagttgtttat 430  Q
    ||||||||||||| |||||||||||||||||||    
T  3501115 cttatgttataagtgtttaattaagttgtttat 3501147  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 22388055 - 22388087
Alignment:
Q  399 ttatgttataagcgtttaattaagttgtttatc 431  Q
    |||||||||||||| ||||||||||||||||||    
T  22388055 ttatgttataagcgcttaattaagttgtttatc 22388087  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 433
Target Start/End: Original strand, 11262875 - 11262938
Alignment:
Q  370 ttatacatatatacttgtatgatagacacttatgttataagcgtttaattaagttgtttatctg 433  Q
    ||||||||| |||||| ||||||| ||| |||| |||  |||| ||||||||||||||||||||    
T  11262875 ttatacataaatacttatatgataaacatttatcttaatagcgcttaattaagttgtttatctg 11262938  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 942198 - 942259
Alignment:
Q  370 ttatacatatatacttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||||| |  ||||||||||| ||| ||||| ||||| ||||| |||||||||||||||    
T  942198 ttatacataaactcttgtatgataaacatttatgctataaacgtttcattaagttgtttatc 942259  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 43932369 - 43932320
Alignment:
Q  382 acttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    |||||||||||| |||||||||||||||| | ||||||||  ||||||||    
T  43932369 acttgtatgataaacacttatgttataagtgcttaattaatctgtttatc 43932320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 5624803 - 5624771
Alignment:
Q  399 ttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||||||||||| |||||||||||||||||    
T  5624803 ttatgttataagcgtataattaagttgtttatc 5624771  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 29563547 - 29563579
Alignment:
Q  399 ttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||| |||||||||||||||||||||||||||    
T  29563547 ttatgctataagcgtttaattaagttgtttatc 29563579  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 14959652 - 14959618
Alignment:
Q  397 acttatgttataagcgtttaattaagttgtttatc 431  Q
    |||||||||||||| ||||||||||||||||||||    
T  14959652 acttatgttataagtgtttaattaagttgtttatc 14959618  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 11911835 - 11911794
Alignment:
Q  397 acttatgttataagcgtttaattaagttgtttatctgaatag 438  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||    
T  11911835 acttatgctattagcgtttaattaagttgtttatccgaatag 11911794  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 36542404 - 36542464
Alignment:
Q  371 tatacatatatacttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    |||||||| | |||| ||||||| | ||||||||||||| ||||||| |||||| ||||||    
T  36542404 tatacataaacacttatatgataaatacttatgttataaacgtttaaataagttttttatc 36542464  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 34563169 - 34563136
Alignment:
Q  399 ttatgttataagcgtttaattaagttgtttatct 432  Q
    ||||| ||||||||||||||||||||||||||||    
T  34563169 ttatgctataagcgtttaattaagttgtttatct 34563136  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 7008560 - 7008516
Alignment:
Q  387 tatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||| || |||||| |||||||| ||||||||||||||||||    
T  7008560 tatgataaacgcttatgctataagcgcttaattaagttgtttatc 7008516  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 48933718 - 48933767
Alignment:
Q  382 acttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    |||| |||||||||||||||||||||||| | ||||||||  ||||||||    
T  48933718 acttatatgatagacacttatgttataagtgcttaattaatctgtttatc 48933767  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 32634292 - 32634231
Alignment:
Q  370 ttatacatatatacttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||||| | |||| | ||||| || |||||| |||||||||| ||||||||||||||||    
T  32634292 ttatacatagacacttatgtgataaacccttatggtataagcgttaaattaagttgtttatc 32634231  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 4908 - 4864
Alignment:
Q  382 acttgtatgatagacacttatgttataagcgtttaattaagttgt 426  Q
    |||| ||||||||||| ||||| |||||||| |||||||||||||    
T  4908 acttatatgatagacatttatgctataagcgcttaattaagttgt 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 396524 - 396576
Alignment:
Q  379 tatacttgtatgatagacacttatgttataagcgtttaattaagttgtttatc 431  Q
    ||||||||||| ||| |||||||||||||||||  |||| |||| ||||||||    
T  396524 tatacttgtataataaacacttatgttataagcacttaagtaagatgtttatc 396576  T

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