View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210R-Insertion-16 (Length: 790)
Name: NF2210R-Insertion-16
Description: NF2210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210R-Insertion-16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 8 - 706
Target Start/End: Complemental strand, 34416107 - 34415409
Alignment:
| Q |
8 |
acatagttcccatattgatcttgagctagcatggaaacacactgcaaaatctcatccatcataatctgttgagttttaggatcatggcagtactccaaga |
107 |
Q |
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| T |
34416107 |
acatagttcccatattgatcttgagctagcatggaaacacactgcaaaatctcatccatcataatctgttgagttttaggatcatggcagtactccaaga |
34416008 |
T |
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| Q |
108 |
ctctctgcttatcaaaacttaactaatttagaatcatagtctctggccagttattttcaattcagtaaatgtgttcacacaaataaaatcaaaaggatga |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34416007 |
ctctctgcttatcaaaactcaactaatttagaatcatagtctctggccagttattttcaattcagtaaatgtgttcacacaaataaaatcaaaaggatga |
34415908 |
T |
|
| Q |
208 |
atttgtcacctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415907 |
atttgtcacctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggt |
34415808 |
T |
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| Q |
308 |
acacattcaatacacttctggatgacatggtttccattctgatcacgcacgcatcgcataatatgaccatccagctccgtaaccattttagtcttttgat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415807 |
acacattcaatacacttctggatgacatggtttccattctgatcacgcacgcatcgcataatatgaccatccagctccgtaaccattttagtcttttgat |
34415708 |
T |
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| Q |
408 |
ctaaattaactactttaatagcctggacaatgtagaaagnnnnnnngattagtaactgtaaattttaaaaccagcacatataaatcacggcagcataata |
507 |
Q |
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| T |
34415707 |
ctaaattaactacttcaatagcctggacaatgtagaaagaaaaaaagattagtaactgtaaattttaaaaccagcacagataaatcacggcagcataata |
34415608 |
T |
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| Q |
508 |
atgtgtcgaaatgtcagtataaacacaaaatgaacaattacatgtaaacaaaatggaaaacactttcgacaccaagagaatgaggacaaaataaaataaa |
607 |
Q |
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| T |
34415607 |
atgtgccgaaatgtcagtataaacacaaaatgaacaattacatgtaaacaaaatggaaaacacattagacaccaagagaatgaggacaaaataaaacaaa |
34415508 |
T |
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| Q |
608 |
agaattggcttcctctcaaaataaattaaaatacctgacaacttgtacctaataagacaaaaggcagcaccttatcattatttcaacaggtgcttgcca |
706 |
Q |
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| T |
34415507 |
agaattggcttcctctcaaaataaattaaaatacctgacaaattgtacctaataagacaaaaggcagcaccttatcattatttcaacaggagcttgcca |
34415409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 707 - 790
Target Start/End: Original strand, 15277734 - 15277817
Alignment:
| Q |
707 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtc |
790 |
Q |
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| T |
15277734 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttgtc |
15277817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 99 - 442
Target Start/End: Original strand, 155459 - 155801
Alignment:
| Q |
99 |
actccaagactctctgcttatcaaaacttaactaatttagaatcatagtctctggccagttattttcaattcagtaaatgtgttcacacaaataaaatca |
198 |
Q |
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| T |
155459 |
actccaagactctctgcttatcaaaacttaactagtttagaatcatagtttcttgccagttattatcaattcagtaaatgtgttcacacaaataaaataa |
155558 |
T |
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| Q |
199 |
aaaggatgaatttgtcacctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttca |
298 |
Q |
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| T |
155559 |
aaaggatggatatgtcacctgtataacacgacagctatatggatgagctgacaacgtcacaacttggttataaaacgttgaaacgataaacctgatttca |
155658 |
T |
|
| Q |
299 |
tcctcaggtacacattcaatacacttctggatgacatggtttccattctgatcacgcacgcatcgcataatatgaccatccagctccgtaaccattttag |
398 |
Q |
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| T |
155659 |
tcctcaggtacacattcaatacacttctggatgacatggtttccattctgatcacacgcgcatcgcataatatgaccatcaagctccgtaaccattt--g |
155756 |
T |
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| Q |
399 |
tcttttgatctaaattaactactttaatagc-ctggacaatgtag |
442 |
Q |
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| T |
155757 |
tcttttgatctaaattaactattttaatagcgctggacaatgtag |
155801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 24139072 - 24138894
Alignment:
| Q |
215 |
acctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacatt |
314 |
Q |
| |
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|||||||| ||||| ||||| |||||||| ||||| | ||||||||||| || |||| |||||||| ||||| | ||| | || ||||| ||||||| |
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| T |
24139072 |
acctgtatcacacgacaaccgtatggatgggttgagagtgtcacaacttgatcgaaaaatgttgaaacaataaagtcgatcgcctcttcagggacacatt |
24138973 |
T |
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| Q |
315 |
caatacacttctggatgacatggtttccattctgatcacgcacgcatcgcataatatgaccatccagctccgtaaccat |
393 |
Q |
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| T |
24138972 |
caatacatttctgaatgacatgattaccattctgatcacgaacacagcgcatgatattaccatcaagctctttaaccat |
24138894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 707 - 790
Target Start/End: Original strand, 18153346 - 18153429
Alignment:
| Q |
707 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtc |
790 |
Q |
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| T |
18153346 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttgtc |
18153429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 707 - 790
Target Start/End: Original strand, 12415336 - 12415419
Alignment:
| Q |
707 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtc |
790 |
Q |
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| T |
12415336 |
tatctataacattggattgaagatcacccaaatcatatacatctctaaccttagcgtgaacaaagacaaaccaatcattttgtc |
12415419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 41721399 - 41721212
Alignment:
| Q |
215 |
acctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacatt |
314 |
Q |
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|||||||| || ||||||||||||||||| || || | ||||||||||| ||| |||| ||||| | ||||| | ||| |||| |||||||| |||| |
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| T |
41721399 |
acctgtatcacccggcaaccatatggatgggtagatagtgtcacaacttgatcaaaaaaagttgagataataaaatcaattgcatcttcaggtacgcatt |
41721300 |
T |
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| Q |
315 |
caatacacttctggatgacatggtttccattctgatcacgcacgcatcgcataatatgaccatccagctccgtaaccattttagtctt |
402 |
Q |
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||||||||||||| ||||||||||| ||||||||||| || || || ||||| |||| |||||| ||||| |||||||||| |||| |
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| T |
41721299 |
caatacacttctgaatgacatggttaccattctgatctcgtacacagcgcatgatattaccatcaagctcttgaaccattttaatctt |
41721212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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