View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210R-Insertion-7 (Length: 395)
Name: NF2210R-Insertion-7
Description: NF2210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210R-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 6715615 - 6715858
Alignment:
| Q |
8 |
agtttggtgtgctaaaaattgacaaatcattgttatccaattgttctggttctgtcaagcagtttttaaagtatattataattgtgttcacttttgcttg |
107 |
Q |
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| T |
6715615 |
agtttggtgtgctgaaaattgacaaatcattgttatccaattgttctggttctgtcaagcagtttttaatgtatattataattgtgttcacttttgcttg |
6715714 |
T |
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| Q |
108 |
cttcaatcaacaatgcaaatattgctcttgctacagaagttgcacatc-agctatctggtaggatcccatatatgaatatgtccccaaataggacattgg |
206 |
Q |
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| T |
6715715 |
cttcaatcaacaatgcaaatattgctcttgctacagaagttgcacatcaagctatctggtaggatcccatatatgaatatggccccaaataggacattgg |
6715814 |
T |
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| Q |
207 |
ttagttaattgctcaagcctatcatgtggggggtgatgttagta |
250 |
Q |
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| T |
6715815 |
ttagttaattgctcaagcctattatttggggggtgatgttagta |
6715858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 250 - 379
Target Start/End: Original strand, 6716155 - 6716284
Alignment:
| Q |
250 |
actgatgaacttccgaaaaccattagcgagattcttgttcagccattgtccgcttctgtcacgtacgcaaagccatttcctgacgtatcaaagattgaag |
349 |
Q |
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| T |
6716155 |
actgatgaacttccgaaaaccattagcgagattcttgttcagccattgtccgcatctgtcacgtactcaaagccatttcctgacgtatcaaagattgaag |
6716254 |
T |
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| Q |
350 |
tctttgctggtcagaattttcaatgatggc |
379 |
Q |
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| T |
6716255 |
tctttgctggtcagaattttcgaagatggc |
6716284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 39723970 - 39723834
Alignment:
| Q |
32 |
aatcattgttatccaattgttctggttctgtcaagcagtttttaaagtatattataattgtgttcacttttgcttgcttcaatcaacaatgcaaatattg |
131 |
Q |
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|||||||||||| ||||||||||| |||| || ||| |||||| ||| ||| || ||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
39723970 |
aatcattgttattcaattgttctgcttctacaaaacagcttttaatgtacattttagttgtgttcacttttgctcacttcagtcaacaatgcaagcattg |
39723871 |
T |
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| Q |
132 |
ctcttgctacagaagttgcacatcagctatctggtag |
168 |
Q |
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| T |
39723870 |
cttctgctacagatgttgcacatcagctatcttgtag |
39723834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 40925854 - 40925915
Alignment:
| Q |
305 |
ctgtcacgtacgcaaagccatttcctgacgtatcaaagattgaagtctttgctggtcagaat |
366 |
Q |
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| T |
40925854 |
ctgtcacctaagcaaagcaattccgtggcgtataaaaaattgaagtctttgctggtcagaat |
40925915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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