View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2210R-Insertion-8 (Length: 397)

Name: NF2210R-Insertion-8
Description: NF2210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2210R-Insertion-8
NF2210R-Insertion-8
[»] chr6 (10 HSPs)
chr6 (185-397)||(28154691-28154898)
chr6 (9-105)||(28154577-28154673)
chr6 (18-115)||(28142622-28142719)
chr6 (6-116)||(28246340-28246450)
chr6 (14-116)||(28525218-28525320)
chr6 (25-106)||(28328595-28328676)
chr6 (25-106)||(28506231-28506312)
chr6 (80-116)||(26887826-26887862)
chr6 (317-393)||(28179386-28179462)
chr6 (12-48)||(28239368-28239404)
[»] scaffold0038 (2 HSPs)
scaffold0038 (6-116)||(46502-46612)
scaffold0038 (12-48)||(39530-39566)
[»] scaffold0019 (1 HSPs)
scaffold0019 (77-116)||(55318-55357)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 185 - 397
Target Start/End: Original strand, 28154691 - 28154898
Alignment:
Q  185 ctccctcagtgaagatctatcattaagacccaatttgttcatcaaagattatgactgtcaaggtggtcttggccattgtagtaatatcggggtagaacca 284  Q
    |||||||||||||  ||  ||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||     
T  28154691 ctccctcagtgaatttcattcattaagacccaatctgttcatcaaagactatgactgtcaaagtggtcttggacatggtagtaatatcggggtagaaccg 28154790  T
Q  285 aataatacgtatctatatattatgatcttcaactggaggatatgcggttcaattctatactacacaatgcatttctgaaaaatgaatggatccatgttga 384  Q
    |||||||||||||||||      |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||    
T  28154791 aataatacgtatctatac-----gatcttcaactggaggatatgcggttcaattctatactgcacaatgcacttctgaaaaatgaatggatccatgtaga 28154885  T
Q  385 gattacatgcagg 397  Q
    |||||||||||||    
T  28154886 gattacatgcagg 28154898  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 28154577 - 28154673
Alignment:
Q  9 ataaattatttatgactaacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaa 105  Q
    |||||||||||||||||||||||| ||||||    |||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  28154577 ataaattatttatgactaacaggagctgcatatatctggaaatacgaacattcgtatggcaggatctgcaaggattctggagtggtttgagcaccaa 28154673  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 28142622 - 28142719
Alignment:
Q  18 ttatgactaacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaaagcacgggac 115  Q
    ||||||||||||||||||||||||| ||||||  ||| |  |||||  ||||||| |   |||||||||||||||||||||||||||||||| |||||    
T  28142622 ttatgactaacaggaactgcatgaggctggaagcacagattttcgttgggcaggaacagaaaggattccagagtggtttgagcaccaaagcaagggac 28142719  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 28246340 - 28246450
Alignment:
Q  6 tcaataaattatttatgactaacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaa 105  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||   || ||  || || |  |||||| | ||||||||||||| |||||||| ||||||    
T  28246340 tcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaa 28246439  T
Q  106 agcacgggaca 116  Q
    |||| ||||||    
T  28246440 agcatgggaca 28246450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 28525218 - 28525320
Alignment:
Q  14 ttatttatgactaacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaaagcacggg 113  Q
    ||||||||| ||||||||||||||||||| |||||   || |   || || || |||||| | |||||||||||||||||||||| ||||||| || |||    
T  28525218 ttatttatggctaacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatggg 28525317  T
Q  114 aca 116  Q
    |||    
T  28525318 aca 28525320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 28328595 - 28328676
Alignment:
Q  25 taacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaaa 106  Q
    |||||||||||||| ||| ||||| |||||||  || || |  |||||| | |||  |||||||||||||||||||||||||    
T  28328595 taacaggaactgcacgaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaa 28328676  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 28506231 - 28506312
Alignment:
Q  25 taacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaaa 106  Q
    |||||||||||||| ||| ||||| |||||||  || || |  |||||| | |||  |||||||||||||||||||||||||    
T  28506231 taacaggaactgcacgaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaa 28506312  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 26887826 - 26887862
Alignment:
Q  80 ggattccagagtggtttgagcaccaaagcacgggaca 116  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  26887826 ggattccagattggtttgagcaccaaagcaggggaca 26887862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 28179386 - 28179462
Alignment:
Q  317 ctggaggatatgcggttcaattctatactacacaatgcatttctgaaaaatgaatggatccatgttgagattacatg 393  Q
    |||||| | ||||| ||||||| | ||| |||||||||| |||  | ||||||||||||| |||| |||||||||||    
T  28179386 ctggagaacatgcgattcaattttgtaccacacaatgcacttcgaagaaatgaatggatcaatgtggagattacatg 28179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 28239368 - 28239404
Alignment:
Q  12 aattatttatgactaacaggaactgcatgagactgga 48  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  28239368 aattatttatggctaacaggaactgcatgaggctgga 28239404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 46502 - 46612
Alignment:
Q  6 tcaataaattatttatgactaacaggaactgcatgagactggaaatacaaacattcgtatggcaggatctacaaggattccagagtggtttgagcaccaa 105  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||   || ||  || || |  |||||| | ||||||||||||| |||||||| ||||||    
T  46502 tcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaa 46601  T
Q  106 agcacgggaca 116  Q
    |||| ||||||    
T  46602 agcatgggaca 46612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 39530 - 39566
Alignment:
Q  12 aattatttatgactaacaggaactgcatgagactgga 48  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  39530 aattatttatggctaacaggaactgcatgaggctgga 39566  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 55357 - 55318
Alignment:
Q  77 caaggattccagagtggtttgagcaccaaagcacgggaca 116  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  55357 caaggattccagagtggtttgagcaccaaaacatgggaca 55318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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