View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_15 (Length: 422)
Name: NF2210_high_15
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 7746872 - 7746698
Alignment:
| Q |
1 |
gagtttctttgcattgttctttgacttagccattgaagatgaaagagagaga--------aagagtattggtttttcttgttaaatttctatgcttggnn |
92 |
Q |
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| T |
7746872 |
gagtttctttgcattgttctttgacttagccattgaagatgaaagagagagagagagagaaagagtattggtttttcttgttaaatttctatgtttggtt |
7746773 |
T |
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| Q |
93 |
nnnnn-atatactaagaaagaaagagtgtttctttacaacaaagctttgttgtgttgggtttgagttgttaaatg |
166 |
Q |
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| T |
7746772 |
ttttttatatactaagaaagaaagagtgtttctttacaacaaagctttgttgtgttgggtttgagttgttaaatg |
7746698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 7746618 - 7746545
Alignment:
| Q |
248 |
agggcggcgggaagaacaaagtcagatcatacatacgcgtgaattgaaaatattagagctgaggggtgtgacaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7746618 |
agggcggcgggaagaacaaagtcagatcatacatacgcgtgaattgaaaatattagagctgatgggtgtgacaa |
7746545 |
T |
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