View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_18 (Length: 399)
Name: NF2210_high_18
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 139 - 381
Target Start/End: Complemental strand, 6715858 - 6715615
Alignment:
| Q |
139 |
tactaacatcaccccccacatgataggcttgagcaattaactaaccaatgtcctatttggggacatattcatatatgggatcctaccagatagct-gatg |
237 |
Q |
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| T |
6715858 |
tactaacatcaccccccaaataataggcttgagcaattaactaaccaatgtcctatttggggccatattcatatatgggatcctaccagatagcttgatg |
6715759 |
T |
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| Q |
238 |
tgcaacttctgtagcaagagcaatatttgcattgttgattgaagcaagcaaaagtgaacacaattataatatactttaaaaactgcttgacagaaccaga |
337 |
Q |
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| T |
6715758 |
tgcaacttctgtagcaagagcaatatttgcattgttgattgaagcaagcaaaagtgaacacaattataatatacattaaaaactgcttgacagaaccaga |
6715659 |
T |
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| Q |
338 |
acaattggataacaatgatttgtcaatttttagcacaccaaact |
381 |
Q |
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| T |
6715658 |
acaattggataacaatgatttgtcaattttcagcacaccaaact |
6715615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 6716284 - 6716155
Alignment:
| Q |
10 |
gccatcattgaaaattctgaccagcaaagacttcaatctttgatacgtcaggaaatggctttgcgtacgtgacagaagcggacaatggctgaacaagaat |
109 |
Q |
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| T |
6716284 |
gccatcttcgaaaattctgaccagcaaagacttcaatctttgatacgtcaggaaatggctttgagtacgtgacagatgcggacaatggctgaacaagaat |
6716185 |
T |
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| Q |
110 |
ctcgctaatggttttcggaagttcatcagt |
139 |
Q |
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| T |
6716184 |
ctcgctaatggttttcggaagttcatcagt |
6716155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 357
Target Start/End: Original strand, 39723834 - 39723970
Alignment:
| Q |
221 |
ctaccagatagctgatgtgcaacttctgtagcaagagcaatatttgcattgttgattgaagcaagcaaaagtgaacacaattataatatactttaaaaac |
320 |
Q |
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| T |
39723834 |
ctacaagatagctgatgtgcaacatctgtagcagaagcaatgcttgcattgttgactgaagtgagcaaaagtgaacacaactaaaatgtacattaaaagc |
39723933 |
T |
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| Q |
321 |
tgcttgacagaaccagaacaattggataacaatgatt |
357 |
Q |
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| T |
39723934 |
tgttttgtagaagcagaacaattgaataacaatgatt |
39723970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 40925915 - 40925854
Alignment:
| Q |
23 |
attctgaccagcaaagacttcaatctttgatacgtcaggaaatggctttgcgtacgtgacag |
84 |
Q |
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| T |
40925915 |
attctgaccagcaaagacttcaattttttatacgccacggaattgctttgcttaggtgacag |
40925854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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