View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_23 (Length: 335)
Name: NF2210_high_23
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 27217888 - 27218210
Alignment:
| Q |
1 |
tacaagatactcccccctttgataaattgtttctttcgcgaagaagtacaagagcacacggaatcatactaaccagattcgttacataaccctttttctt |
100 |
Q |
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| T |
27217888 |
tacaagatactcccccctttgataaattgtttctttcgcgaagaagtacaagagcacacggaatcatactaaccagattcgttacataaccctttttctt |
27217987 |
T |
|
| Q |
101 |
ctggttattctcgttataactactatgtcaggtttcgagtttccatttgcagcaagactctcattgctaaatccatgtccaataaaccacatcttgaatg |
200 |
Q |
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| T |
27217988 |
ctgattattctcgttataactactatgtcaggttttgagtttccatttgcagcaagactctcattgctaaatccatgtccaataaagcacatcttgaatg |
27218087 |
T |
|
| Q |
201 |
aagcactttccacttcctcttcagaagggccattcttgccgaaattacataaggtaaagactgaaggatatttcaaaagaagcatccatcacaccagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
27218088 |
aagcactttccacttcctcttcagaagggccattcttgccgaaattacataaggtaaagattgaaggatatttcaaaagaagcatccgtcacaccagaaa |
27218187 |
T |
|
| Q |
301 |
ggccattcttcctaaaataccta |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
27218188 |
ggccattcttcctaaaataccta |
27218210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 104 - 321
Target Start/End: Original strand, 27202203 - 27202421
Alignment:
| Q |
104 |
gttattctcgttataactactatgtcaggtttcgagtttccatttgcagcaagactctcattgctaaatccatgtccaataaaccacatcttgaatgaag |
203 |
Q |
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| T |
27202203 |
gttattattgttataacatccatgtcaggtt--gagtttccatttgcagcaagactctcattgctaaatctatatccaataaaccacatcttgaatgaag |
27202300 |
T |
|
| Q |
204 |
cactttccacttcctcttcagaagggccattcttgccgaaat---tacataaggtaaagactgaaggatatttcaaaagaagcatccatcacaccagaaa |
300 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| || | |||| |||||||||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
27202301 |
cactttccacttcctctttagaagggccattcttgcgaaactacgtacagaaggtaaagattgaaggatatttagaaagaagcatccttcacaccagaag |
27202400 |
T |
|
| Q |
301 |
ggccattcttcctaaaatacc |
321 |
Q |
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|||||| |||||||||||||| |
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| T |
27202401 |
ggccatccttcctaaaatacc |
27202421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 283
Target Start/End: Original strand, 37578908 - 37579088
Alignment:
| Q |
103 |
ggttattctcgttataactactatgtcaggtttcgagtttccatttgcagcaagactctcattgctaaatccatgtccaataaaccacatcttgaatgaa |
202 |
Q |
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||||||||| ||||||||| | ||||||||||| |||| | | |||||||||||||||||| ||||||| |||||||||| |||||||||||| |||||| |
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| T |
37578908 |
ggttattcttgttataacttccatgtcaggttttgagtctgcttttgcagcaagactctcactgctaaaaccatgtccaacaaaccacatcttaaatgaa |
37579007 |
T |
|
| Q |
203 |
gcactttccacttcctcttcagaagggccattcttgccgaaattacataaggtaaagactgaaggatatttcaaaagaagc |
283 |
Q |
| |
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||||||| |||||| ||||||||||| || | ||||| ||| || || | |||| | |||||||||||||||||||||| |
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| T |
37579008 |
gcacttttcacttcttcttcagaaggaccctgcttgctaaaaccacctaggctaaaaattgaaggatatttcaaaagaagc |
37579088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 3296969 - 3296836
Alignment:
| Q |
104 |
gttattctcgttataactactatgtcaggtttcgagtttccatttgcagcaagactctcattgctaaatccatgtccaataaaccacatcttgaatgaag |
203 |
Q |
| |
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|||||||| ||||| | | | ||||||||||| | |||||| | || |||||||||||| || ||||| || |||| | ||||||||||||||| |||| |
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| T |
3296969 |
gttattcttgttattatttccatgtcaggttttgtgtttccttgtgaagcaagactctcgttactaaaaccgcgtccgacaaaccacatcttgaacgaag |
3296870 |
T |
|
| Q |
204 |
cactttccacttcctcttcagaagggccattctt |
237 |
Q |
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| T |
3296869 |
cgctttctacctcctcttctgcagggccgttctt |
3296836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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