View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_26 (Length: 324)
Name: NF2210_high_26
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 1289774 - 1289969
Alignment:
| Q |
3 |
atcatcttattcattaaacttcttttgctattaacgttcaacatatttattttcccatatatttgtttgtggaagaccatattgctactcaatgttccac |
102 |
Q |
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| T |
1289774 |
atcatcttattcattaaacttcttttgctattaacgttcaacatatttattttcccatatatttgtttgtggaagaccatattgctactcaatgttccac |
1289873 |
T |
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| Q |
103 |
aaatttatgaagaaattatcggatttatacattaaagtatatctcagctttatcaactttaacaccttccagtttgtctactaaatatatctcagg |
198 |
Q |
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| T |
1289874 |
aaatttatgaagaaattatcggatttatacattaaagtatatctcagctttatcaactttaacaccttccagtttgtctactaaatatatctcagg |
1289969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 1290029 - 1290090
Alignment:
| Q |
258 |
aactgaacctccactagatagaactaaaaaattaagtgtagaacatagtggctagatctgtg |
319 |
Q |
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| T |
1290029 |
aactgaacctccactagatagaactagaaaattaagtgtagaacatagtggctagatctgtg |
1290090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 14139162 - 14139220
Alignment:
| Q |
258 |
aactgaacctccactagatagaactaaaaaattaagtgtagaacatagtggctagatct |
316 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14139162 |
aactgaacctccaccggatagaactagaaaattaagtgtagaacatagtggctagatct |
14139220 |
T |
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