View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2210_high_28 (Length: 305)
Name: NF2210_high_28
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 44 - 292
Target Start/End: Original strand, 54221887 - 54222136
Alignment:
| Q |
44 |
gcctcatcattccactgtatggaggcttcatcatca-atagggattgtcggcataacttggcctgggttggattcaatcaaattcttatataactgctta |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54221887 |
gcctcatcattccactgtatggaggcttcatcatcatatagggattgtcggcataacttggcctgggttggattcaatcaaattcttatataactgctta |
54221986 |
T |
|
| Q |
143 |
gtgtatagggtcatcggttaggtctagtttcgataaattcttctataatttttgtctttgaaaacaagctcactttcttgccaacacagtgcatttgttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54221987 |
gtgtatagggtcatcggttaggtctagtttctataaattcttctataatttttgtctttgaaaacaagctcactttcttgccaacacagtgcatttgttg |
54222086 |
T |
|
| Q |
243 |
gaatcagttgacactgttgattacgaaattaatcaattcaatcatcaaat |
292 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54222087 |
ggatcagttgacactgttgattacgaaattaatcaattcaatcatcaaat |
54222136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54221826 - 54221878
Alignment:
| Q |
1 |
tgcttgaaaagatgcttgcataggctatcttgatgtgtaactggcctcatcat |
53 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54221826 |
tgcttgaaaagatgctggcataggctatcttgatgtgtaactggcctcatcat |
54221878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University