View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_3 (Length: 862)
Name: NF2210_high_3
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 703; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 19 - 853
Target Start/End: Original strand, 2483623 - 2484438
Alignment:
| Q |
19 |
gttcttattctatttttctttattttatatctgtacgtatttgtattgttaacatggtatgaagagcatggttcgatccgcttgaaccactaatcgcttc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2483623 |
gttcttattctatttttctttattttatatctgta----tttgtattgttaacatggtatcaagagcatggttcgatccgcttgaaccactaatcgcttc |
2483718 |
T |
|
| Q |
119 |
tgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtgatttggttttcttaatttgttattttggttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483719 |
tgccgtcgaattccaaaagtttgggattgtttttggtttgtcttttgaatattcgttatattgatagtgatttggttttcttaatttgttattttggttt |
2483818 |
T |
|
| Q |
219 |
tcttagtttgttaaaaatattcagaggcattacaaattgattattgagtttcttcatgtgcagcaagtggcatatcttgtgtttgcaattttggtttctt |
318 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
2483819 |
tcttagtttgttaaaaatcttcagaggcattacaacttgattattgagtttcttcatgtgcagcaagtggcatatcttgaatt-gcaattttggtttctt |
2483917 |
T |
|
| Q |
319 |
cttaaaataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483918 |
cttaaaataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaat |
2484017 |
T |
|
| Q |
419 |
tgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaat |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
2484018 |
tgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattacgatccactcagaaaggcttgtttggtgtggttgtgatgcaat |
2484117 |
T |
|
| Q |
519 |
ttggtgataaattgtatatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgatta |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2484118 |
ttggtgataaattgtatatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgatta |
2484217 |
T |
|
| Q |
619 |
aggttggttattctggttgtactttgaattcggtttggttcatttggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcct |
718 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484218 |
aggttggttattctggttgtactttgaattc--------------ggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcct |
2484303 |
T |
|
| Q |
719 |
ttctgtttgactgcatatctcccctttatgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttctttgtttaactagtttctc |
818 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
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|
| T |
2484304 |
ttctgtttgactgcacatctcccctttatgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttgtttgtttaattggtttctc |
2484403 |
T |
|
| Q |
819 |
cttcattagtttttctgattgattgtccctctctg |
853 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||| |
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|
| T |
2484404 |
cctcattagtttttctcattgattgtccctctctg |
2484438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 2479191 - 2479359
Alignment:
| Q |
55 |
gtatttgtattgttaacatggtatgaagagcatggttcgatccgctt--gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttta |
152 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
2479191 |
gtatatgtgttgttaacattgtatgaagagcatggtttgatcctcttttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgttttt |
2479290 |
T |
|
| Q |
153 |
ggtttgtcttttgaatattcgt----tatattgatagtgatttggttttcttaatttgttattttggtt |
217 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||| |||||| |
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| T |
2479291 |
ggtttgtcttttgaatattcgttatatatattgatagtgatttagttctcttgatttgttatgttggtt |
2479359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 1175506 - 1175437
Alignment:
| Q |
75 |
gtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttggga |
144 |
Q |
| |
|
|||| ||||| |||||| |||| |||||||||||| ||||||| || ||||||| |||||||||||||| |
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| T |
1175506 |
gtatcaagagtatggtttgatcgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttggga |
1175437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 325 - 535
Target Start/End: Complemental strand, 17927621 - 17927413
Alignment:
| Q |
325 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
424 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
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|
| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
|
| Q |
425 |
tgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
523 |
Q |
| |
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||||||||||||||||||| |||||| | | ||||||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| | |
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| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
524 |
gataaattgtat |
535 |
Q |
| |
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|||||||||||| |
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|
| T |
17927424 |
gataaattgtat |
17927413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 3775795 - 3775671
Alignment:
| Q |
90 |
ttcgatccgc-ttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtga |
188 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||||| || | |||| |||||||| ||| ||||||| || ||| |
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| T |
3775795 |
ttcgatccgccttgaaccacttgtcgcttctgttatcgatttcaaaaagtttgggattgtgtttgatttgccttttgaagattgattatattaatcatga |
3775696 |
T |
|
| Q |
189 |
tttggttttcttaatttgttatttt |
213 |
Q |
| |
|
||||||| || || |||||||||| |
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|
| T |
3775695 |
tttggttctcccaacttgttatttt |
3775671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 24135082 - 24135127
Alignment:
| Q |
56 |
tatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
101 |
Q |
| |
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||||||||||||||| ||||||| |||||| ||||| ||||||||| |
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| T |
24135082 |
tatttgtattgttaagatggtatcaagagcgtggtttgatccgctt |
24135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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