View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_33 (Length: 299)
Name: NF2210_high_33
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 6455035 - 6454746
Alignment:
| Q |
10 |
attatacttccttgtaataaaagataagcnnnnnnntacattaatcttgttttttccttatattttgttatggacatgttcatgttcttaccataatgaa |
109 |
Q |
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| T |
6455035 |
attatacttccttgtaataaaagataagcaaaaaaatacattaatcttgttttttcgttatattttgttatggacatgttcatgttctttccataatgaa |
6454936 |
T |
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| Q |
110 |
gaagaaatgataatatttcatatcaaaataatcatgtatatattgattctatttgaataaagaacttaagtaaacacttacagaataaacacttatcgta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
6454935 |
gaagaaatgataatatttcatatcaaaataatcatgtatatattgattctatttgaataaagaacttaagtaaacgcttatagaataaacacttatcgta |
6454836 |
T |
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| Q |
210 |
taaaagtgcttatctaggataatattgcttactttcatgaccaccaagaagttgaacagcatgaacaaaatgggaatgaagggttgtagt |
299 |
Q |
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| T |
6454835 |
taaaagtgcttatctaggataatattgcttactttcatgaccaccaagtagttgaacagcatgaacaaaatgggaatgaagggttgtagt |
6454746 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 29258844 - 29258804
Alignment:
| Q |
238 |
ttactttcatgaccaccaagaagttgaacagcatgaacaaa |
278 |
Q |
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| T |
29258844 |
ttactttcatggccaccaagaagctcaacagcatgaacaaa |
29258804 |
T |
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