View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_34 (Length: 283)
Name: NF2210_high_34
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 34249462 - 34249208
Alignment:
| Q |
13 |
aatataagagtcctaaggaaagattgcaaataagtatactatccttaagtaacaataccaaattgtccctttttatgtgacattttatcatacattatac |
112 |
Q |
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| T |
34249462 |
aatataagagtcctaagaaaagattgcaaataagtatactatccttaagtaacaataccaaattgtccctttttatgtgacattttatcatacattatac |
34249363 |
T |
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| Q |
113 |
atgcatatgtactaacatatgcagtgtannnnnnnatcaagtagcctggtgcctagaaattcaccacgagggttcgaactctgacactgcatattgctat |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34249362 |
atgcatatgtactaacatatgcagtgtatttttttatcaagtagcctagtgcctagaaattcaccacgagggttcgaactctgacattgcatattgctat |
34249263 |
T |
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| Q |
213 |
gtccgtatgaactgaggtatgttcaaggaacagtgcaacttacttttaactagaa |
267 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34249262 |
gtccctacgaactgaggtatgttcaaggaacagtgcaacttacttttaactagaa |
34249208 |
T |
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