View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_36 (Length: 268)
Name: NF2210_high_36
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_36 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 28048643 - 28048376
Alignment:
| Q |
1 |
agaatatcgaaatccctgatttattataattttgcatgcaacttatagattatagatgaaagaaagtcataaaaatatataaaagtacaatgttgaagac |
100 |
Q |
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| T |
28048643 |
agaatatcgaaatccctgatttattataattttgcatgcaacttatagattatagatgaaagaaagtcataaaaatatataaaagtacaatgttgaagac |
28048544 |
T |
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| Q |
101 |
atgagaatgttcggatggtttatggtggtgactaacttttagagataaattgaaaagagctttagacatgtcataagctattttagtaatcttttcttaa |
200 |
Q |
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| T |
28048543 |
atgagaatgttcggatggtttatggtggtgactaacttttagagataaattgaaaagagctttagacatgtcataagctatttttgtaatcttttcttaa |
28048444 |
T |
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| Q |
201 |
acacagtctcacaattgtgtatatcgttcgcataatgggataggaatataattggtttagaatagaat |
268 |
Q |
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| T |
28048443 |
acacagtctcacaattgtgtatatcgttcgcataatgggataggaatataattggtttagaatagaat |
28048376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 28037371 - 28037306
Alignment:
| Q |
129 |
tgactaacttttagagataaattgaaaagagcttta----gacatgtcataagctattttagtaat |
190 |
Q |
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| T |
28037371 |
tgactaacttttagagataaattaaaaacagctttagacagacatgtcataacctatttttgtaat |
28037306 |
T |
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