View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_high_47 (Length: 221)
Name: NF2210_high_47
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 26785356 - 26785170
Alignment:
| Q |
18 |
tgatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacttgaggttcaagc |
117 |
Q |
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| T |
26785356 |
tgatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacctgaggttcaagc |
26785257 |
T |
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| Q |
118 |
tcataaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttggttgttc |
204 |
Q |
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| T |
26785256 |
tcataaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttggttgttc |
26785170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 26765238 - 26765056
Alignment:
| Q |
22 |
ttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacttgaggttcaagctcat |
121 |
Q |
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| T |
26765238 |
ttgtgtccaagattaaagtaaggtatgtttggaccaattgtgtaaattggaattgtgagctttgattttaatgcatcaattacttgaggttcaagctcat |
26765139 |
T |
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| Q |
122 |
aaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttggttgttc |
204 |
Q |
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| T |
26765138 |
aaattgaaggtagtaatagatattgtgctttgagaagccattgacaacttttgagagcccattgcaaaatttggtggttgttc |
26765056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 31005545 - 31005462
Alignment:
| Q |
82 |
tttgattttaaggcatcaattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccattga |
165 |
Q |
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| T |
31005545 |
tttgattttaaggtatcaatggcttgagattcaagctcataaattgaagtgaatagaagatattgtgctttgtgaatccattga |
31005462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 32075468 - 32075549
Alignment:
| Q |
82 |
tttgattttaaggcatcaattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccatt |
163 |
Q |
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| T |
32075468 |
tttgattttaagacatcaatggcttgagattcaagctcataaattgaagagaatagaagatattgtgctttgtgaatccatt |
32075549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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