View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_1 (Length: 1036)
Name: NF2210_low_1
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 715; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 7 - 855
Target Start/End: Original strand, 1599330 - 1600191
Alignment:
| Q |
7 |
tggacatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatat--taatttgttctactctcacttgtggagtgaagt |
104 |
Q |
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| T |
1599330 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagt |
1599429 |
T |
|
| Q |
105 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
204 |
Q |
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| T |
1599430 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
1599529 |
T |
|
| Q |
205 |
ccgttttttaacaaaccatggtatatggaagttaaggaattctagacatgttttaaagctctaaagtcc-----caatcagaatccctctaaaatgttat |
299 |
Q |
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| T |
1599530 |
ccgttttttaacaaaccatggtatatggaagttaaggaattttagacatgttttaaagctctaaagtcccgtcccaatcagaatccctctaaaatgttat |
1599629 |
T |
|
| Q |
300 |
caaacccacaatcttacattccttcaattttaactaaaaatctttgttagtaaacaatatatcgtgtgccaattcaatgaaaactaaatcttgtttattt |
399 |
Q |
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| T |
1599630 |
caaacccacaatcttacattccttcaattttaactaaaaatctttgttagtaaacaatatatcgtgtgccaattcaatgaaaactaaatcttgtttattt |
1599729 |
T |
|
| Q |
400 |
ttattttgtactcttaagctaccttcatatataattcaagtcaagaaaggattcaataggtatcttgcataacaagttaacaactttcacataacaaaac |
499 |
Q |
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| T |
1599730 |
ttattttgtactcttaagctaccttcatatataattgaagtcaagaaagtattcaataggtatcttgcataacaagttaacaactttcacataacaaaac |
1599829 |
T |
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| Q |
500 |
accttacttcaacaaagactactactattttactattgaaaacgtta-tttaagtaacgaaacgaaaaaggcttcagaaaatttaagagaaccaaatcac |
598 |
Q |
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| T |
1599830 |
accttacttcaacaaagactactactattttactattgaaaacgttattttaagtaaagaaacgaaaaaggcttcagaaaatttaagagaaccaaatcac |
1599929 |
T |
|
| Q |
599 |
accctccagcagaagaagaaatcaggcttccattctgagactgcaggaatatgactagcatcacctcaccatctcatccaatgtcttgt----------- |
687 |
Q |
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| T |
1599930 |
accctccagcagaagaagaaatcaggcttccattctgagactgcaggaatatgactagcctcacctcaccatctcatccaatgtcttgtaaagttgtaat |
1600029 |
T |
|
| Q |
688 |
-----aaagttgcatttcaatcttcaactgattatttagtaatgcaactatggagaataatgtcttacagcaagaatttagtaagtataacacaagaatt |
782 |
Q |
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| T |
1600030 |
ttaccaaagttgcatttcaatcttcaactgattatttagtaatgcaactatggagaataatgtcttacagcaagaatttagtaagtataacacaagaatt |
1600129 |
T |
|
| Q |
783 |
ttatccaattcaggggcaaaacaatgaaaaactaattaaaatttatttgcattatacaagttaaatctcaaaa |
855 |
Q |
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| T |
1600130 |
ttatccaattcagg-----------gcaaaactaattaaaatttatttgcattatacaagttaaatctcaaaa |
1600191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 878 - 1016
Target Start/End: Original strand, 1600174 - 1600312
Alignment:
| Q |
878 |
acaagttaaatctcaaaaatactaacttacacaattattatgcacagacttataaacaataagtaatttctttcagaagtaaatctcaacaaaaaagcat |
977 |
Q |
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| T |
1600174 |
acaagttaaatctcaaaaatattaacttacgcaattattatgcacagacttataaacaataagtaatttctttcagaagtaaatctcaacaaaaaagcat |
1600273 |
T |
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| Q |
978 |
cttacatttcagggttcattcaagaaggcatccatgact |
1016 |
Q |
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| T |
1600274 |
cttacatttcagggttcattcaagaaggcatccatgact |
1600312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 589 - 650
Target Start/End: Complemental strand, 5769071 - 5769010
Alignment:
| Q |
589 |
accaaatcacaccctccagcagaagaagaaatcaggcttccattctgagactgcaggaatat |
650 |
Q |
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| T |
5769071 |
accaaatcacaccttccagcagaagaagaaatcaggtatccattcctagactccagaaatat |
5769010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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