View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_11 (Length: 485)
Name: NF2210_low_11
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 35163077 - 35163278
Alignment:
| Q |
5 |
tagattatactcattactcatatttaacatgtgacaaattctttaccaagccaaattatttaaaccttgtgtctctaaatctaaataaaacaggaaaaac |
104 |
Q |
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| T |
35163077 |
tagattatactcatcactcatatttaacatgtgacaaattctttaccta-----attatttaaaccttgtgtctctaaatctaaataaaacaggaaaaac |
35163171 |
T |
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| Q |
105 |
taatttatcaactcctactttgtctcttctaaaataatttcaatcccacttcacaggtggtaaacaaagaacaaccgccaaataattcacttaactaccg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163172 |
taatttatcaactcctactttgtctcttctaaaataatttcaatcccacttcaca---ggtaaacaaagaacaaccgccaaataattcacttaactacca |
35163268 |
T |
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| Q |
205 |
gttgattgat |
214 |
Q |
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|||||||||| |
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| T |
35163269 |
gttgattgat |
35163278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 324 - 449
Target Start/End: Original strand, 35163385 - 35163510
Alignment:
| Q |
324 |
ctggacgccgtccacccttataaatactagacactcccaccttcttttctcatcccacctccatctacacttgccaattcaagacacaacagcaccaaga |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
35163385 |
ctggacgccgtccacccttataaatactagacactcccaccttcttttctcatcccacctcactctacacttgccaattcaagacacaacaacaccaaga |
35163484 |
T |
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| Q |
424 |
gtgttgaattacaaaagagagaggga |
449 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35163485 |
gtgttgaattacaaaagagagaggga |
35163510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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